Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26597 | 3' | -59.5 | NC_005357.1 | + | 37633 | 0.74 | 0.132192 |
Target: 5'- uCCCGCagcgccagccggcgUGCUGGGCGcagugugGGCGaACGCCGAGa -3' miRNA: 3'- -GGGCG--------------GCGACCUGC-------UUGC-UGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 14386 | 0.7 | 0.270111 |
Target: 5'- aCCGUCGCc-GACGuguucuucGGCGACGCCGAc -3' miRNA: 3'- gGGCGGCGacCUGC--------UUGCUGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 38877 | 0.7 | 0.27687 |
Target: 5'- gCCCGCUGCUGcGCuauucGGCGGCGCCuGGa -3' miRNA: 3'- -GGGCGGCGACcUGc----UUGCUGCGGcUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 4041 | 0.66 | 0.479009 |
Target: 5'- gCCgGCCGC-GG-CGAGCGGCagGCCa-- -3' miRNA: 3'- -GGgCGGCGaCCuGCUUGCUG--CGGcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 16391 | 0.73 | 0.165626 |
Target: 5'- gCCCGCCGCgcGGGCuuuGAUGccauCGCCGAGg -3' miRNA: 3'- -GGGCGGCGa-CCUGc--UUGCu---GCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 34635 | 0.73 | 0.174176 |
Target: 5'- -gCGCCuGCUGGGCGgcgaaggGugGACGCCGGc -3' miRNA: 3'- ggGCGG-CGACCUGC-------UugCUGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 16759 | 0.72 | 0.188971 |
Target: 5'- aUCCGCCgGCUGauGACGuacAUGACGCCGGc -3' miRNA: 3'- -GGGCGG-CGAC--CUGCu--UGCUGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 14536 | 0.72 | 0.193974 |
Target: 5'- aUCCGCgacgUGCUGGGCGAGC-ACGCCaAGa -3' miRNA: 3'- -GGGCG----GCGACCUGCUUGcUGCGGcUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 27591 | 0.72 | 0.208066 |
Target: 5'- gCUgGCCGCcaacggcaucgaccUGGGCGAaggcaGCGcCGCCGAGg -3' miRNA: 3'- -GGgCGGCG--------------ACCUGCU-----UGCuGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 13688 | 0.7 | 0.268775 |
Target: 5'- aCCG-CGCUGGACGAugccaagGCGcucauccucgcguGCGCCGAc -3' miRNA: 3'- gGGCgGCGACCUGCU-------UGC-------------UGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 40360 | 0.71 | 0.244402 |
Target: 5'- aUCGUggUGCUGGGCG-ACGACcCCGAGg -3' miRNA: 3'- gGGCG--GCGACCUGCuUGCUGcGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 3335 | 0.72 | 0.204329 |
Target: 5'- gCUGUCGCUGGugGAAUGcgucACGCCa-- -3' miRNA: 3'- gGGCGGCGACCugCUUGC----UGCGGcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 29789 | 0.74 | 0.133633 |
Target: 5'- aCCCGaCGCcaaaGGACGGcagcaGCGAUGCCGAGc -3' miRNA: 3'- -GGGCgGCGa---CCUGCU-----UGCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 16808 | 0.7 | 0.256993 |
Target: 5'- aCgCGCUGCUGG-CGAccGCGcCGCCGuGg -3' miRNA: 3'- -GgGCGGCGACCuGCU--UGCuGCGGCuC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 33107 | 0.74 | 0.133633 |
Target: 5'- gCCCGCCGCgccGACGuGCGccgccagguCGCCGAGg -3' miRNA: 3'- -GGGCGGCGac-CUGCuUGCu--------GCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 21147 | 0.72 | 0.199093 |
Target: 5'- gCCGaCCGCUGGGCcGACacuuACGCCGAc -3' miRNA: 3'- gGGC-GGCGACCUGcUUGc---UGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 25492 | 0.7 | 0.26612 |
Target: 5'- -aCGCUGCUGGACGGcgccgugcccuACGAaaucgccaaucccuaCGCCGAa -3' miRNA: 3'- ggGCGGCGACCUGCU-----------UGCU---------------GCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 14080 | 0.7 | 0.272798 |
Target: 5'- aUCCGCgCGCUGcccGACGAggccaaggccaucgaGucCGACGCCGAGc -3' miRNA: 3'- -GGGCG-GCGAC---CUGCU---------------U--GCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 29006 | 0.74 | 0.143738 |
Target: 5'- gCCUGCCGUgGGACGAgaaccguuaccgcaACGAUGCCGc- -3' miRNA: 3'- -GGGCGGCGaCCUGCU--------------UGCUGCGGCuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 17308 | 0.72 | 0.182636 |
Target: 5'- cCCCGUgGCUGGACaagaagcacccgcuGuaucccACGGCGCCGGGc -3' miRNA: 3'- -GGGCGgCGACCUG--------------Cu-----UGCUGCGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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