miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26599 5' -54.8 NC_005357.1 + 216 0.66 0.674077
Target:  5'- aCGGCGAacugGCGCAccucGG-CAuuGGcGCGCUGg -3'
miRNA:   3'- gGUCGCUa---CGCGU----UCaGU--UC-CGCGAC- -5'
26599 5' -54.8 NC_005357.1 + 18678 0.66 0.674077
Target:  5'- cCCGGUG--GCGCcGG-CAuGGCGCUGc -3'
miRNA:   3'- -GGUCGCuaCGCGuUCaGUuCCGCGAC- -5'
26599 5' -54.8 NC_005357.1 + 33781 0.66 0.662815
Target:  5'- aCAGCGAguacgGCGCGGccUggGGCGUUu -3'
miRNA:   3'- gGUCGCUa----CGCGUUcaGuuCCGCGAc -5'
26599 5' -54.8 NC_005357.1 + 7132 0.66 0.651522
Target:  5'- cCCAGCGGU-UGCAua--AGGGCGCUc -3'
miRNA:   3'- -GGUCGCUAcGCGUucagUUCCGCGAc -5'
26599 5' -54.8 NC_005357.1 + 14159 0.66 0.651522
Target:  5'- cCCAGCGcgcggucaugGUGCGCAacauGGUgAGccuGGCGCa- -3'
miRNA:   3'- -GGUCGC----------UACGCGU----UCAgUU---CCGCGac -5'
26599 5' -54.8 NC_005357.1 + 12502 0.66 0.640211
Target:  5'- aCAGUGGcguuuuucaUGaacaGCGcGUCGAGGUGCUGc -3'
miRNA:   3'- gGUCGCU---------ACg---CGUuCAGUUCCGCGAC- -5'
26599 5' -54.8 NC_005357.1 + 3741 0.66 0.640211
Target:  5'- gCCGGUGGUGgGCAcGUCGGuGCcgccGCUGg -3'
miRNA:   3'- -GGUCGCUACgCGUuCAGUUcCG----CGAC- -5'
26599 5' -54.8 NC_005357.1 + 24313 0.66 0.640211
Target:  5'- gUCGGCGAgcaGcCGCGGGUC-AGGCGg-- -3'
miRNA:   3'- -GGUCGCUa--C-GCGUUCAGuUCCGCgac -5'
26599 5' -54.8 NC_005357.1 + 8192 0.66 0.628892
Target:  5'- gCCGGCGAUuucaucGCGCAcggccucguAGUC---GCGCUGg -3'
miRNA:   3'- -GGUCGCUA------CGCGU---------UCAGuucCGCGAC- -5'
26599 5' -54.8 NC_005357.1 + 1724 0.66 0.628892
Target:  5'- gCCGGCGAggGCGUccAAGUCcucgcGGGUGUUa -3'
miRNA:   3'- -GGUCGCUa-CGCG--UUCAGu----UCCGCGAc -5'
26599 5' -54.8 NC_005357.1 + 36646 0.66 0.628892
Target:  5'- gCC-GCGAUG-GCGggacacgauGGUCAAGGCcCUGg -3'
miRNA:   3'- -GGuCGCUACgCGU---------UCAGUUCCGcGAC- -5'
26599 5' -54.8 NC_005357.1 + 19192 0.66 0.617576
Target:  5'- cCCAGCGAgGCGCG-GUCGGuGGC-Cg- -3'
miRNA:   3'- -GGUCGCUaCGCGUuCAGUU-CCGcGac -5'
26599 5' -54.8 NC_005357.1 + 12047 0.67 0.606273
Target:  5'- cCCAGCG-UGuCG-AAGUCGAuGGCGCc- -3'
miRNA:   3'- -GGUCGCuAC-GCgUUCAGUU-CCGCGac -5'
26599 5' -54.8 NC_005357.1 + 10720 0.67 0.606273
Target:  5'- cCCGcGCGcgGCGgGcuGGUCAGgcGGUGCUGc -3'
miRNA:   3'- -GGU-CGCuaCGCgU--UCAGUU--CCGCGAC- -5'
26599 5' -54.8 NC_005357.1 + 21691 0.67 0.606273
Target:  5'- gCCAGaaGGUGCGaCAGGUCGAGGU--UGa -3'
miRNA:   3'- -GGUCg-CUACGC-GUUCAGUUCCGcgAC- -5'
26599 5' -54.8 NC_005357.1 + 33444 0.67 0.594994
Target:  5'- cCCcGCGcgGCG-AGGaaaUCGAGGCGCUu -3'
miRNA:   3'- -GGuCGCuaCGCgUUC---AGUUCCGCGAc -5'
26599 5' -54.8 NC_005357.1 + 29810 0.67 0.583749
Target:  5'- gCAGCGAUGC-CGAGcgCGucGGCGCc- -3'
miRNA:   3'- gGUCGCUACGcGUUCa-GUu-CCGCGac -5'
26599 5' -54.8 NC_005357.1 + 38582 0.68 0.53928
Target:  5'- gCGGCGAggUGCGCAA----AGuGCGCUGg -3'
miRNA:   3'- gGUCGCU--ACGCGUUcaguUC-CGCGAC- -5'
26599 5' -54.8 NC_005357.1 + 16156 0.68 0.53928
Target:  5'- --cGCGAUGCGCGAGcCGaccaggccggcGGGUGCc- -3'
miRNA:   3'- gguCGCUACGCGUUCaGU-----------UCCGCGac -5'
26599 5' -54.8 NC_005357.1 + 9212 0.68 0.528333
Target:  5'- gCGGCGcgGCGCAcGUUcugcGGCGCg- -3'
miRNA:   3'- gGUCGCuaCGCGUuCAGuu--CCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.