miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26600 3' -55.9 NC_005357.1 + 12303 0.75 0.192564
Target:  5'- aGGCCGGCGgCGUGUUCuGGC-GcgGCc -3'
miRNA:   3'- -CCGGCUGCgGCACGAGuUCGuCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 13925 0.69 0.402807
Target:  5'- cGGCaGAUGaCCGaguucggcaaUGC-CGAGCGGAUGCu -3'
miRNA:   3'- -CCGgCUGC-GGC----------ACGaGUUCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 8449 0.69 0.421755
Target:  5'- cGGCgCGAUGUCG-GCgUCGAGguGGccUGCg -3'
miRNA:   3'- -CCG-GCUGCGGCaCG-AGUUCguCU--ACG- -5'
26600 3' -55.9 NC_005357.1 + 35344 0.66 0.633874
Target:  5'- uGGgCG-CGCCGUGggUAGGCcGcgGCg -3'
miRNA:   3'- -CCgGCuGCGGCACgaGUUCGuCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 31733 0.73 0.257482
Target:  5'- cGGCCGAgGCCGUGCgcgcugccgUCAAGacgcaacuggacaCGGcgGCg -3'
miRNA:   3'- -CCGGCUgCGGCACG---------AGUUC-------------GUCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 42016 0.72 0.27118
Target:  5'- cGGCCGAcgaucacCGCCGUGCUgCuGGUGGgcGCc -3'
miRNA:   3'- -CCGGCU-------GCGGCACGA-GuUCGUCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 11203 0.72 0.281834
Target:  5'- gGGCCGcGCGCCGggguucuucaUGCuuucgcccucgaccgUCAGGCAGAacgUGCg -3'
miRNA:   3'- -CCGGC-UGCGGC----------ACG---------------AGUUCGUCU---ACG- -5'
26600 3' -55.9 NC_005357.1 + 26899 0.71 0.31186
Target:  5'- aGGCCGGCaCCGUGCauaucggccugcccaUCAccGCAGAacUGCa -3'
miRNA:   3'- -CCGGCUGcGGCACG---------------AGUu-CGUCU--ACG- -5'
26600 3' -55.9 NC_005357.1 + 14345 0.7 0.370093
Target:  5'- cGGaauaCGACGCCGcggccaccugcccgcUGUUCGAGCAGAc-- -3'
miRNA:   3'- -CCg---GCUGCGGC---------------ACGAGUUCGUCUacg -5'
26600 3' -55.9 NC_005357.1 + 16011 0.69 0.402807
Target:  5'- aGGUCGAgggcaugaguuaCGCCGUGCuggccgagaaguUCGAGCAGuccaaggGCg -3'
miRNA:   3'- -CCGGCU------------GCGGCACG------------AGUUCGUCua-----CG- -5'
26600 3' -55.9 NC_005357.1 + 12040 0.7 0.381695
Target:  5'- cGUgGACGCCGUuaUCAccgacccacccuacAGCAGcgGCg -3'
miRNA:   3'- cCGgCUGCGGCAcgAGU--------------UCGUCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 41406 0.7 0.366572
Target:  5'- cGGCCGugGCCuuccagGUGUUCGAcGCuGcgGUg -3'
miRNA:   3'- -CCGGCugCGG------CACGAGUU-CGuCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 12214 0.74 0.203294
Target:  5'- cGCCGAgugcgUGCgCGUGCUCAAGCccGGcgGCu -3'
miRNA:   3'- cCGGCU-----GCG-GCACGAGUUCG--UCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 14936 0.7 0.393537
Target:  5'- cGGCCGAgGCCGccgGCaUCcucGCGuGGUGCg -3'
miRNA:   3'- -CCGGCUgCGGCa--CG-AGuu-CGU-CUACG- -5'
26600 3' -55.9 NC_005357.1 + 8652 0.73 0.244998
Target:  5'- aGGCCG-CGCCGUaCUCGcuguguGCAGcgGCu -3'
miRNA:   3'- -CCGGCuGCGGCAcGAGUu-----CGUCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 26006 0.7 0.366572
Target:  5'- cGCCGGCgauuaccccgcgGCCGUGUccuacuUCGAGCAacgccGAUGCu -3'
miRNA:   3'- cCGGCUG------------CGGCACG------AGUUCGU-----CUACG- -5'
26600 3' -55.9 NC_005357.1 + 5121 0.69 0.401873
Target:  5'- cGGCUGGCGCCGUugaacugcaacguGCcgcgCAGGCGGccGUc -3'
miRNA:   3'- -CCGGCUGCGGCA-------------CGa---GUUCGUCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 4828 0.69 0.421755
Target:  5'- gGGCCGGCGCCGUcGUcgaauUCAcggaaAGCGGccaGCu -3'
miRNA:   3'- -CCGGCUGCGGCA-CG-----AGU-----UCGUCua-CG- -5'
26600 3' -55.9 NC_005357.1 + 35191 0.73 0.251504
Target:  5'- cGGCCGAcauCGCCGaggGUgagcgCGGcGCAGAUGCu -3'
miRNA:   3'- -CCGGCU---GCGGCa--CGa----GUU-CGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 20894 0.72 0.27188
Target:  5'- uGCUGGgGCCgGUGCUUGAaCGGAUGCa -3'
miRNA:   3'- cCGGCUgCGG-CACGAGUUcGUCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.