miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26601 3' -53.7 NC_005357.1 + 18396 0.66 0.768269
Target:  5'- gGCGCCgGUggcGGccaCGUCGGCGAAGguggcguuguccGCCg -3'
miRNA:   3'- -CGCGGgCGa--CCa--GUAGCUGUUUC------------UGG- -5'
26601 3' -53.7 NC_005357.1 + 11624 0.66 0.768269
Target:  5'- uGCGCaaGCgUGGUCAUCGGgGAAa--- -3'
miRNA:   3'- -CGCGggCG-ACCAGUAGCUgUUUcugg -5'
26601 3' -53.7 NC_005357.1 + 42042 0.66 0.768269
Target:  5'- uCGCgCGCUGGccgcgcUCaAUCGGC--AGGCCa -3'
miRNA:   3'- cGCGgGCGACC------AG-UAGCUGuuUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 33427 0.66 0.768269
Target:  5'- cCGCCUGCUGGaagCGcccccgcgCGGCGAGGAa- -3'
miRNA:   3'- cGCGGGCGACCa--GUa-------GCUGUUUCUgg -5'
26601 3' -53.7 NC_005357.1 + 23247 0.66 0.765157
Target:  5'- cGCGCCuCGCUGGggaacagCAuggucaggucggugUCGGCGugcGCCa -3'
miRNA:   3'- -CGCGG-GCGACCa------GU--------------AGCUGUuucUGG- -5'
26601 3' -53.7 NC_005357.1 + 24038 0.66 0.757847
Target:  5'- cGUGgCCGCcaccGGcgcCAUCGGC-AAGGCCa -3'
miRNA:   3'- -CGCgGGCGa---CCa--GUAGCUGuUUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 5238 0.66 0.757847
Target:  5'- aCGCCacgguguugaCGUUGG-CGUUGGCAccGGCCa -3'
miRNA:   3'- cGCGG----------GCGACCaGUAGCUGUuuCUGG- -5'
26601 3' -53.7 NC_005357.1 + 19651 0.66 0.757847
Target:  5'- -gGCCCGCaGGgCGUUGACcaAucGGCCc -3'
miRNA:   3'- cgCGGGCGaCCaGUAGCUG--UuuCUGG- -5'
26601 3' -53.7 NC_005357.1 + 41974 0.66 0.74729
Target:  5'- aGCGCCCGCaagcUGGccgcgCAgcagcccaaCGACAAGGuacgGCCg -3'
miRNA:   3'- -CGCGGGCG----ACCa----GUa--------GCUGUUUC----UGG- -5'
26601 3' -53.7 NC_005357.1 + 20217 0.66 0.74729
Target:  5'- aGCGCCCGCggccGGcUGUUGGCcuuGGGugCc -3'
miRNA:   3'- -CGCGGGCGa---CCaGUAGCUGu--UUCugG- -5'
26601 3' -53.7 NC_005357.1 + 14920 0.66 0.74729
Target:  5'- cGCGCCgagaaGCUGG----CGGCcGAGGCCg -3'
miRNA:   3'- -CGCGGg----CGACCaguaGCUGuUUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 2799 0.66 0.736612
Target:  5'- uGCGCCCaCU--UCGUCGAUucgucGGGCCa -3'
miRNA:   3'- -CGCGGGcGAccAGUAGCUGuu---UCUGG- -5'
26601 3' -53.7 NC_005357.1 + 34264 0.66 0.736612
Target:  5'- aGCGCCUucCUGGgccgCAUCaucgaggugaacGGCAAGGGCUg -3'
miRNA:   3'- -CGCGGGc-GACCa---GUAG------------CUGUUUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 35058 0.66 0.736612
Target:  5'- gGUGCCCGCcgcUGGaCGaaCGACGccgaggucGAGGCCg -3'
miRNA:   3'- -CGCGGGCG---ACCaGUa-GCUGU--------UUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 18576 0.66 0.736612
Target:  5'- cGCGCUCGC-GGUgA-CGGCcu-GGCCg -3'
miRNA:   3'- -CGCGGGCGaCCAgUaGCUGuuuCUGG- -5'
26601 3' -53.7 NC_005357.1 + 15931 0.66 0.725823
Target:  5'- aUGCCgGCUuGcgaGUCGGCGAGGAUCa -3'
miRNA:   3'- cGCGGgCGAcCag-UAGCUGUUUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 5555 0.66 0.725823
Target:  5'- uCGCCCGCcacGG-UAUCGACGGc-GCCa -3'
miRNA:   3'- cGCGGGCGa--CCaGUAGCUGUUucUGG- -5'
26601 3' -53.7 NC_005357.1 + 25716 0.66 0.725823
Target:  5'- aGC-CCCGCggcggGGUCGUCGuccuCAccGGCg -3'
miRNA:   3'- -CGcGGGCGa----CCAGUAGCu---GUuuCUGg -5'
26601 3' -53.7 NC_005357.1 + 14249 0.67 0.714938
Target:  5'- cGCaCCUGCUGGgCGUgGGCAAcGGCg -3'
miRNA:   3'- -CGcGGGCGACCaGUAgCUGUUuCUGg -5'
26601 3' -53.7 NC_005357.1 + 22060 0.67 0.714938
Target:  5'- cGCGCuuGCUcgGGUCGcggUCGGCGcgcGGCUc -3'
miRNA:   3'- -CGCGggCGA--CCAGU---AGCUGUuu-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.