miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26604 3' -58.8 NC_005357.1 + 1993 0.65 0.479744
Target:  5'- uGCCGUggcugaucuugagGCCCaGGCgc-UCGCUGGCGa -3'
miRNA:   3'- gCGGUA-------------CGGG-CUGauaGGCGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 23063 0.65 0.476713
Target:  5'- gGCCcUGgCCGACcucaacggcaauUCCGCcgccUGGCGCc -3'
miRNA:   3'- gCGGuACgGGCUGau----------AGGCG----ACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 34236 0.66 0.47068
Target:  5'- gGCCGUGCgCGAUgaaaUCGCcGGCaGCa -3'
miRNA:   3'- gCGGUACGgGCUGaua-GGCGaCCG-CG- -5'
26604 3' -58.8 NC_005357.1 + 18589 0.66 0.47068
Target:  5'- uCGCC-UGCCUG-CUgGUCaCGCcGGUGCc -3'
miRNA:   3'- -GCGGuACGGGCuGA-UAG-GCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 35054 0.66 0.47068
Target:  5'- cCGCgGUGCCCG-----CCGCUGGaCGa -3'
miRNA:   3'- -GCGgUACGGGCugauaGGCGACC-GCg -5'
26604 3' -58.8 NC_005357.1 + 36083 0.66 0.47068
Target:  5'- gGCCuucggGCCgGGCgcuUUgGCUGGgGCg -3'
miRNA:   3'- gCGGua---CGGgCUGau-AGgCGACCgCG- -5'
26604 3' -58.8 NC_005357.1 + 37143 0.66 0.467678
Target:  5'- aCGCCGUGgCCGACaacgCCGCgaacaucaacacggUGGC-Cg -3'
miRNA:   3'- -GCGGUACgGGCUGaua-GGCG--------------ACCGcG- -5'
26604 3' -58.8 NC_005357.1 + 24689 0.66 0.460712
Target:  5'- aCGuCCAcGCCCaGGCUGUCCaucGGUGCc -3'
miRNA:   3'- -GC-GGUaCGGG-CUGAUAGGcgaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 12025 0.66 0.459721
Target:  5'- gGCCGUGgCCGGCgagGUCUugcccaGCgugucgaagucgaUGGCGCc -3'
miRNA:   3'- gCGGUACgGGCUGa--UAGG------CG-------------ACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 30413 0.66 0.450857
Target:  5'- uCGCCG-GCCaCGGCcgcgCUGCUGGC-Cg -3'
miRNA:   3'- -GCGGUaCGG-GCUGaua-GGCGACCGcG- -5'
26604 3' -58.8 NC_005357.1 + 38870 0.66 0.449878
Target:  5'- aCGCCcaGCCCGcugcugcGCUAUUCGgC-GGCGCc -3'
miRNA:   3'- -GCGGuaCGGGC-------UGAUAGGC-GaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 25990 0.66 0.441119
Target:  5'- aCGCCGUGUUCaACg--CCGCcGGCGa -3'
miRNA:   3'- -GCGGUACGGGcUGauaGGCGaCCGCg -5'
26604 3' -58.8 NC_005357.1 + 33850 0.66 0.43822
Target:  5'- uCGCCGUgaccgucgugucgcGCCUGucGCUGcCCGCcaucGGCGCg -3'
miRNA:   3'- -GCGGUA--------------CGGGC--UGAUaGGCGa---CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 7166 0.66 0.431501
Target:  5'- aGCCcagGCCCGACg---CGCUGaCGCc -3'
miRNA:   3'- gCGGua-CGGGCUGauagGCGACcGCG- -5'
26604 3' -58.8 NC_005357.1 + 13607 0.66 0.431501
Target:  5'- gGCCGcaaCCCGACgacggCgCGCUGGCuGCu -3'
miRNA:   3'- gCGGUac-GGGCUGaua--G-GCGACCG-CG- -5'
26604 3' -58.8 NC_005357.1 + 9202 0.67 0.422951
Target:  5'- gGCC-UGCUCGGCggcgcggcgcacguUCUGC-GGCGCg -3'
miRNA:   3'- gCGGuACGGGCUGau------------AGGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 17935 0.67 0.422007
Target:  5'- gCGCCA-GCCCcuacGACU--UC-CUGGCGCa -3'
miRNA:   3'- -GCGGUaCGGG----CUGAuaGGcGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 7734 0.67 0.422007
Target:  5'- aCGCUcgGCggCCGGCUugCUGUUGGCGa -3'
miRNA:   3'- -GCGGuaCG--GGCUGAuaGGCGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 35852 0.67 0.422007
Target:  5'- gGCCGUGCUgGGCUAcuuccucaaggaUgCGCUGaCGCc -3'
miRNA:   3'- gCGGUACGGgCUGAU------------AgGCGACcGCG- -5'
26604 3' -58.8 NC_005357.1 + 17280 0.67 0.422007
Target:  5'- uGCCGUccacGaagCCGGCg--CCGCgGGCGCg -3'
miRNA:   3'- gCGGUA----Cg--GGCUGauaGGCGaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.