Results 1 - 20 of 116 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 36786 | 1.11 | 0.000177 |
Target: 5'- aACCGCGUCCAGCCACCAGCAAGCUGCg -3' miRNA: 3'- -UGGCGCAGGUCGGUGGUCGUUCGACG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 4787 | 0.8 | 0.042823 |
Target: 5'- cACUGCGcCCAGCaCGCCGGCuggcGCUGCg -3' miRNA: 3'- -UGGCGCaGGUCG-GUGGUCGuu--CGACG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 4015 | 0.77 | 0.068393 |
Target: 5'- -aCGCG-CCGGCCACCAGCGucauGCcGCg -3' miRNA: 3'- ugGCGCaGGUCGGUGGUCGUu---CGaCG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 29121 | 0.76 | 0.091286 |
Target: 5'- cGCCGCcuacaacgCCGGCC-CCGGCGcGCUGCa -3' miRNA: 3'- -UGGCGca------GGUCGGuGGUCGUuCGACG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 27432 | 0.76 | 0.08619 |
Target: 5'- cACCGCGcCCGGCgGCC-GCAGGCccugGCg -3' miRNA: 3'- -UGGCGCaGGUCGgUGGuCGUUCGa---CG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 21753 | 0.76 | 0.083744 |
Target: 5'- gGCCGCGUCCacauaggacaGGCCGCCcGGCAcGgUGCu -3' miRNA: 3'- -UGGCGCAGG----------UCGGUGG-UCGUuCgACG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 7785 | 0.76 | 0.083744 |
Target: 5'- cGCCgGCGUCCAcccuucGCCGcCCAGCAGGC-GCu -3' miRNA: 3'- -UGG-CGCAGGU------CGGU-GGUCGUUCGaCG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 14269 | 0.75 | 0.108342 |
Target: 5'- aACgGCGUggucgaUCuGaCCACCGGCAAGCUGCu -3' miRNA: 3'- -UGgCGCA------GGuC-GGUGGUCGUUCGACG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 34473 | 0.75 | 0.096668 |
Target: 5'- -gCGCG-CCgaGGCCACgGGCAAGCUGUc -3' miRNA: 3'- ugGCGCaGG--UCGGUGgUCGUUCGACG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 15474 | 0.75 | 0.09947 |
Target: 5'- aGCUGcCGUCCAguugcaucGCCACCGGCAGGguUUGCa -3' miRNA: 3'- -UGGC-GCAGGU--------CGGUGGUCGUUC--GACG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 28977 | 0.75 | 0.105305 |
Target: 5'- cACCGCGcCCgaGGCCGCCaagcuGGCGGGcCUGCc -3' miRNA: 3'- -UGGCGCaGG--UCGGUGG-----UCGUUC-GACG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 36229 | 0.74 | 0.124795 |
Target: 5'- aGCCGCGcgCC-GUCACCuGCAAacGCUGCg -3' miRNA: 3'- -UGGCGCa-GGuCGGUGGuCGUU--CGACG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 41812 | 0.73 | 0.143539 |
Target: 5'- cGCCGUGUCCacggcgcugcuGGCCgACCcGCAGGCgGCc -3' miRNA: 3'- -UGGCGCAGG-----------UCGG-UGGuCGUUCGaCG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 21150 | 0.73 | 0.151734 |
Target: 5'- cGCCGUGUCCGcGCCcugguucaacaGCgCGGCcuGCUGCg -3' miRNA: 3'- -UGGCGCAGGU-CGG-----------UG-GUCGuuCGACG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 20108 | 0.73 | 0.147585 |
Target: 5'- -gCGCGUUCGGCacgGCCAGCAGcaucguGCUGCc -3' miRNA: 3'- ugGCGCAGGUCGg--UGGUCGUU------CGACG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 24126 | 0.73 | 0.135751 |
Target: 5'- uGCCGUGUCUAuuacaccgucGCCACCGGCccGCUGa -3' miRNA: 3'- -UGGCGCAGGU----------CGGUGGUCGuuCGACg -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 25991 | 0.73 | 0.14314 |
Target: 5'- cGCCGUGUUCAacGCCGCCGGCGAuuaccccGCgGCc -3' miRNA: 3'- -UGGCGCAGGU--CGGUGGUCGUU-------CGaCG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 18662 | 0.72 | 0.15991 |
Target: 5'- aGCCGCGgcgcaUCGGCCcgguggcGCCGGCAuggcGCUGCu -3' miRNA: 3'- -UGGCGCa----GGUCGG-------UGGUCGUu---CGACG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 4431 | 0.72 | 0.16392 |
Target: 5'- uGCCGCG-CCagggggaAGCCGCCAGCGguGGCaccgucaUGCa -3' miRNA: 3'- -UGGCGCaGG-------UCGGUGGUCGU--UCG-------ACG- -5' |
|||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 24800 | 0.72 | 0.178919 |
Target: 5'- cCCGCGUUgaAGUCGCCguacAGCAucuGGCUGCg -3' miRNA: 3'- uGGCGCAGg-UCGGUGG----UCGU---UCGACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home