miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 5' -62.8 NC_005357.1 + 9943 0.66 0.2923
Target:  5'- uCGGC-CUUGGauucggGCGCAUCgGCC-GCc -3'
miRNA:   3'- -GCCGcGGACCga----CGCGUAGgCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 22011 0.66 0.287333
Target:  5'- uCGGCGCCUGGCucgaaauagaccgacUuccacgccauguuGCGguCGUCgCGCUUGCu -3'
miRNA:   3'- -GCCGCGGACCG---------------A-------------CGC--GUAG-GCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 18064 0.66 0.285224
Target:  5'- cCGGCGCg-GGgUGCGUgcugggCCGCCgaagccgGCg -3'
miRNA:   3'- -GCCGCGgaCCgACGCGua----GGCGGa------CG- -5'
26611 5' -62.8 NC_005357.1 + 30471 0.66 0.285224
Target:  5'- gGGCGCC-GGUcauCGCGUCa-CCUGCu -3'
miRNA:   3'- gCCGCGGaCCGac-GCGUAGgcGGACG- -5'
26611 5' -62.8 NC_005357.1 + 14323 0.66 0.285224
Target:  5'- gCGcGCGCCuUGGCUGaacugCCggGCCUGCu -3'
miRNA:   3'- -GC-CGCGG-ACCGACgcguaGG--CGGACG- -5'
26611 5' -62.8 NC_005357.1 + 18694 0.66 0.285224
Target:  5'- uGGCGCU--GCUGCGCG-CCaCCgagGCa -3'
miRNA:   3'- gCCGCGGacCGACGCGUaGGcGGa--CG- -5'
26611 5' -62.8 NC_005357.1 + 31175 0.66 0.285224
Target:  5'- cCGGUGaagcaCgGGCcGCGCAcguUCUGCCUGa -3'
miRNA:   3'- -GCCGCg----GaCCGaCGCGU---AGGCGGACg -5'
26611 5' -62.8 NC_005357.1 + 3184 0.66 0.285224
Target:  5'- cCGGCGUCc-GCUGCGUAca-GCUUGCu -3'
miRNA:   3'- -GCCGCGGacCGACGCGUaggCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 24363 0.66 0.285224
Target:  5'- uCGG-GUCgagGGCUucGCGCAUUCGCCaccacaacucgcUGCg -3'
miRNA:   3'- -GCCgCGGa--CCGA--CGCGUAGGCGG------------ACG- -5'
26611 5' -62.8 NC_005357.1 + 41743 0.66 0.278285
Target:  5'- gGGCgGCCcGGCcgGCGCcgCCGUagGCg -3'
miRNA:   3'- gCCG-CGGaCCGa-CGCGuaGGCGgaCG- -5'
26611 5' -62.8 NC_005357.1 + 3869 0.66 0.278285
Target:  5'- aGGCGCCgucGCUGUagg-CCGCgCUGCc -3'
miRNA:   3'- gCCGCGGac-CGACGcguaGGCG-GACG- -5'
26611 5' -62.8 NC_005357.1 + 6294 0.66 0.277598
Target:  5'- gGGCGCCggGGCUuaucuccggugcGUGCAagacgcggcgcguUCCGCCccaGCc -3'
miRNA:   3'- gCCGCGGa-CCGA------------CGCGU-------------AGGCGGa--CG- -5'
26611 5' -62.8 NC_005357.1 + 12140 0.66 0.27148
Target:  5'- -cGCGCCacgcGCUGCGCuUCCGCguagGCg -3'
miRNA:   3'- gcCGCGGac--CGACGCGuAGGCGga--CG- -5'
26611 5' -62.8 NC_005357.1 + 4515 0.66 0.27148
Target:  5'- gCGGCGCCcgugaacgUGGCgUGCuggGCGgucgugCCGCC-GCg -3'
miRNA:   3'- -GCCGCGG--------ACCG-ACG---CGUa-----GGCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 26836 0.66 0.27148
Target:  5'- uGGCcgaUGGCgcgGUGCAUCCGCa-GCg -3'
miRNA:   3'- gCCGcggACCGa--CGCGUAGGCGgaCG- -5'
26611 5' -62.8 NC_005357.1 + 16284 0.66 0.27148
Target:  5'- aCGGCGagccGCUGCGCcaaAUCUGCC-GCg -3'
miRNA:   3'- -GCCGCggacCGACGCG---UAGGCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 41069 0.66 0.26481
Target:  5'- uCGGuCGCC-GGaUGCGCAaggCCGCCgaccacgGCu -3'
miRNA:   3'- -GCC-GCGGaCCgACGCGUa--GGCGGa------CG- -5'
26611 5' -62.8 NC_005357.1 + 23947 0.66 0.258273
Target:  5'- aGGCGCCgcccGGCgagGUcgGCAUuuGCCgauucaUGCg -3'
miRNA:   3'- gCCGCGGa---CCGa--CG--CGUAggCGG------ACG- -5'
26611 5' -62.8 NC_005357.1 + 41938 0.66 0.258273
Target:  5'- gCGGCGCaguauGCUGCcgagGCAUCCGaCC-GCg -3'
miRNA:   3'- -GCCGCGgac--CGACG----CGUAGGC-GGaCG- -5'
26611 5' -62.8 NC_005357.1 + 14603 0.66 0.257627
Target:  5'- cCGGCGCCaccgcgGGCaGCGCGcgcgaggacgugcUgCGgCUGCg -3'
miRNA:   3'- -GCCGCGGa-----CCGaCGCGU-------------AgGCgGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.