miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26614 3' -55.5 NC_005357.1 + 36272 0.66 0.595911
Target:  5'- gGGUGcccGUGCCuCACCccugGGGAAGUAGCCu -3'
miRNA:   3'- -UCAC---CGUGGuGUGG----UUCUUCGUCGGu -5'
26614 3' -55.5 NC_005357.1 + 6369 0.66 0.595911
Target:  5'- cGG-GGCGCUggguuACACCAGGucGGCcGCCGc -3'
miRNA:   3'- -UCaCCGUGG-----UGUGGUUCu-UCGuCGGU- -5'
26614 3' -55.5 NC_005357.1 + 4822 0.66 0.594775
Target:  5'- aGGUcGGgGCCgGCGCCGucgucgaauucacGGAAaGCGGCCAg -3'
miRNA:   3'- -UCA-CCgUGG-UGUGGU-------------UCUU-CGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 27580 0.66 0.584573
Target:  5'- aAG-GGCACCgGCAgCAGGcGGC-GCCAg -3'
miRNA:   3'- -UCaCCGUGG-UGUgGUUCuUCGuCGGU- -5'
26614 3' -55.5 NC_005357.1 + 8278 0.66 0.583441
Target:  5'- --cGGCuuccaggGCCACgcuGCCGGGGcaguGCAGCCAg -3'
miRNA:   3'- ucaCCG-------UGGUG---UGGUUCUu---CGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 33050 0.66 0.58231
Target:  5'- cAGUGGCugCACAaugcac-GCGGCCGc -3'
miRNA:   3'- -UCACCGugGUGUgguucuuCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 42183 0.66 0.573277
Target:  5'- --cGGCACCAC-CgGGGAaacccAGCGcGCCAa -3'
miRNA:   3'- ucaCCGUGGUGuGgUUCU-----UCGU-CGGU- -5'
26614 3' -55.5 NC_005357.1 + 8696 0.66 0.573277
Target:  5'- aGGUGuGCGCCGCGC--AGAuuGCuGCCGa -3'
miRNA:   3'- -UCAC-CGUGGUGUGguUCUu-CGuCGGU- -5'
26614 3' -55.5 NC_005357.1 + 41823 0.66 0.562033
Target:  5'- --cGGCGCUGCugGCCGAcccgcAGGCGGCCAu -3'
miRNA:   3'- ucaCCGUGGUG--UGGUUc----UUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 40835 0.66 0.562033
Target:  5'- ---cGCACUcgacCACCAGGAaggcGGCGGCCAc -3'
miRNA:   3'- ucacCGUGGu---GUGGUUCU----UCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 16936 0.66 0.562033
Target:  5'- uAG-GGCACgGCGCCGuccAGCAGCg- -3'
miRNA:   3'- -UCaCCGUGgUGUGGUucuUCGUCGgu -5'
26614 3' -55.5 NC_005357.1 + 39383 0.66 0.562033
Target:  5'- cGU-GCugCugACCAGGAuggAGCAGCa- -3'
miRNA:   3'- uCAcCGugGugUGGUUCU---UCGUCGgu -5'
26614 3' -55.5 NC_005357.1 + 13860 0.66 0.562033
Target:  5'- cGGUGGCcgACgugCGCGCCGcGAuggccGGCGGCCGc -3'
miRNA:   3'- -UCACCG--UG---GUGUGGUuCU-----UCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 33746 0.66 0.55085
Target:  5'- --cGGCG-CACACCuGGGcggcgcAGCAGCCGc -3'
miRNA:   3'- ucaCCGUgGUGUGGuUCU------UCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 38285 0.66 0.55085
Target:  5'- aGGUGGgcggcuucCACUauGCGCCGGGAAGCAacGCUg -3'
miRNA:   3'- -UCACC--------GUGG--UGUGGUUCUUCGU--CGGu -5'
26614 3' -55.5 NC_005357.1 + 11389 0.66 0.55085
Target:  5'- cGGUGGCgACCugAugggCCAGGGucuugAGCAGCg- -3'
miRNA:   3'- -UCACCG-UGGugU----GGUUCU-----UCGUCGgu -5'
26614 3' -55.5 NC_005357.1 + 37693 0.66 0.55085
Target:  5'- nGUGGCcgagaacaucGCgGuCAUCAucGAAGCAGCCAa -3'
miRNA:   3'- uCACCG----------UGgU-GUGGUu-CUUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 32276 0.66 0.547508
Target:  5'- -cUGGCugCugACCGccuuccagaagaaaGGAGGCguGGCCGg -3'
miRNA:   3'- ucACCGugGugUGGU--------------UCUUCG--UCGGU- -5'
26614 3' -55.5 NC_005357.1 + 35974 0.67 0.539736
Target:  5'- cGUGGUGCgugaguuCgGGGAAGCAGCCAa -3'
miRNA:   3'- uCACCGUGgugu---GgUUCUUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 34508 0.67 0.539736
Target:  5'- aGGUGGaCGCCGaGCgCAAcGAGCAGCUg -3'
miRNA:   3'- -UCACC-GUGGUgUG-GUUcUUCGUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.