Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26614 | 3' | -55.5 | NC_005357.1 | + | 6369 | 0.66 | 0.595911 |
Target: 5'- cGG-GGCGCUggguuACACCAGGucGGCcGCCGc -3' miRNA: 3'- -UCaCCGUGG-----UGUGGUUCu-UCGuCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 36272 | 0.66 | 0.595911 |
Target: 5'- gGGUGcccGUGCCuCACCccugGGGAAGUAGCCu -3' miRNA: 3'- -UCAC---CGUGGuGUGG----UUCUUCGUCGGu -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 4822 | 0.66 | 0.594775 |
Target: 5'- aGGUcGGgGCCgGCGCCGucgucgaauucacGGAAaGCGGCCAg -3' miRNA: 3'- -UCA-CCgUGG-UGUGGU-------------UCUU-CGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 27580 | 0.66 | 0.584573 |
Target: 5'- aAG-GGCACCgGCAgCAGGcGGC-GCCAg -3' miRNA: 3'- -UCaCCGUGG-UGUgGUUCuUCGuCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 8278 | 0.66 | 0.583441 |
Target: 5'- --cGGCuuccaggGCCACgcuGCCGGGGcaguGCAGCCAg -3' miRNA: 3'- ucaCCG-------UGGUG---UGGUUCUu---CGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 33050 | 0.66 | 0.58231 |
Target: 5'- cAGUGGCugCACAaugcac-GCGGCCGc -3' miRNA: 3'- -UCACCGugGUGUgguucuuCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 8696 | 0.66 | 0.573277 |
Target: 5'- aGGUGuGCGCCGCGC--AGAuuGCuGCCGa -3' miRNA: 3'- -UCAC-CGUGGUGUGguUCUu-CGuCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 42183 | 0.66 | 0.573277 |
Target: 5'- --cGGCACCAC-CgGGGAaacccAGCGcGCCAa -3' miRNA: 3'- ucaCCGUGGUGuGgUUCU-----UCGU-CGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 39383 | 0.66 | 0.562033 |
Target: 5'- cGU-GCugCugACCAGGAuggAGCAGCa- -3' miRNA: 3'- uCAcCGugGugUGGUUCU---UCGUCGgu -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 16936 | 0.66 | 0.562033 |
Target: 5'- uAG-GGCACgGCGCCGuccAGCAGCg- -3' miRNA: 3'- -UCaCCGUGgUGUGGUucuUCGUCGgu -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 40835 | 0.66 | 0.562033 |
Target: 5'- ---cGCACUcgacCACCAGGAaggcGGCGGCCAc -3' miRNA: 3'- ucacCGUGGu---GUGGUUCU----UCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 41823 | 0.66 | 0.562033 |
Target: 5'- --cGGCGCUGCugGCCGAcccgcAGGCGGCCAu -3' miRNA: 3'- ucaCCGUGGUG--UGGUUc----UUCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 13860 | 0.66 | 0.562033 |
Target: 5'- cGGUGGCcgACgugCGCGCCGcGAuggccGGCGGCCGc -3' miRNA: 3'- -UCACCG--UG---GUGUGGUuCU-----UCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 11389 | 0.66 | 0.55085 |
Target: 5'- cGGUGGCgACCugAugggCCAGGGucuugAGCAGCg- -3' miRNA: 3'- -UCACCG-UGGugU----GGUUCU-----UCGUCGgu -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 33746 | 0.66 | 0.55085 |
Target: 5'- --cGGCG-CACACCuGGGcggcgcAGCAGCCGc -3' miRNA: 3'- ucaCCGUgGUGUGGuUCU------UCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 37693 | 0.66 | 0.55085 |
Target: 5'- nGUGGCcgagaacaucGCgGuCAUCAucGAAGCAGCCAa -3' miRNA: 3'- uCACCG----------UGgU-GUGGUu-CUUCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 38285 | 0.66 | 0.55085 |
Target: 5'- aGGUGGgcggcuucCACUauGCGCCGGGAAGCAacGCUg -3' miRNA: 3'- -UCACC--------GUGG--UGUGGUUCUUCGU--CGGu -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 32276 | 0.66 | 0.547508 |
Target: 5'- -cUGGCugCugACCGccuuccagaagaaaGGAGGCguGGCCGg -3' miRNA: 3'- ucACCGugGugUGGU--------------UCUUCG--UCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 35974 | 0.67 | 0.539736 |
Target: 5'- cGUGGUGCgugaguuCgGGGAAGCAGCCAa -3' miRNA: 3'- uCACCGUGgugu---GgUUCUUCGUCGGU- -5' |
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26614 | 3' | -55.5 | NC_005357.1 | + | 34508 | 0.67 | 0.539736 |
Target: 5'- aGGUGGaCGCCGaGCgCAAcGAGCAGCUg -3' miRNA: 3'- -UCACC-GUGGUgUG-GUUcUUCGUCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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