miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 33751 0.66 0.309945
Target:  5'- cACAccuGGGCGGCGcagcAGC-CGCuGCACacagcgaguacgGCGCg -3'
miRNA:   3'- -UGU---CCCGCCGU----UCGcGCG-CGUG------------CGCG- -5'
26616 3' -62.4 NC_005357.1 + 35187 0.66 0.309945
Target:  5'- --uGGGCGGCcgacaucgccGAGgGUGaGCGCgGCGCa -3'
miRNA:   3'- uguCCCGCCG----------UUCgCGCgCGUG-CGCG- -5'
26616 3' -62.4 NC_005357.1 + 21242 0.66 0.302525
Target:  5'- cGCAGaccaGCaGCAGGC-CGCGCAgcaggcCGCGCu -3'
miRNA:   3'- -UGUCc---CGcCGUUCGcGCGCGU------GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 31104 0.66 0.302525
Target:  5'- uGCAGGcCGGCGAGUG-GUGCGagauaGCGg -3'
miRNA:   3'- -UGUCCcGCCGUUCGCgCGCGUg----CGCg -5'
26616 3' -62.4 NC_005357.1 + 31020 0.66 0.302525
Target:  5'- --cGGGCuugccggccgaGGCAAucGCGCGgGCcaACGUGCg -3'
miRNA:   3'- uguCCCG-----------CCGUU--CGCGCgCG--UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 15604 0.66 0.302525
Target:  5'- uCGGGGCGGCGcAGCcUGCcaaaaacaGCACGCc- -3'
miRNA:   3'- uGUCCCGCCGU-UCGcGCG--------CGUGCGcg -5'
26616 3' -62.4 NC_005357.1 + 25000 0.66 0.295241
Target:  5'- gGCGGGGCcacugcucaagGGCGA-CGUGgGCGC-CGCu -3'
miRNA:   3'- -UGUCCCG-----------CCGUUcGCGCgCGUGcGCG- -5'
26616 3' -62.4 NC_005357.1 + 19856 0.66 0.295241
Target:  5'- aGCAGcGUGGUGAGUucggGCGUGCcgaaggcgucGCGCGCc -3'
miRNA:   3'- -UGUCcCGCCGUUCG----CGCGCG----------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 29567 0.66 0.295241
Target:  5'- uCGGGGUaucgcgucaGGUcGGC-CGCGCccagGCGCGCg -3'
miRNA:   3'- uGUCCCG---------CCGuUCGcGCGCG----UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14412 0.66 0.295241
Target:  5'- aGCuGGGCGucgcCAGGCGCGCcugcgGCAcCGUGUu -3'
miRNA:   3'- -UGuCCCGCc---GUUCGCGCG-----CGU-GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 8574 0.66 0.295241
Target:  5'- --uGGGCGucGUAGGcCGCGCGUGCG-GCc -3'
miRNA:   3'- uguCCCGC--CGUUC-GCGCGCGUGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 36912 0.66 0.295241
Target:  5'- --uGGGCGGCcGGCGUGCcUACGacuuugGCa -3'
miRNA:   3'- uguCCCGCCGuUCGCGCGcGUGCg-----CG- -5'
26616 3' -62.4 NC_005357.1 + 28756 0.66 0.288095
Target:  5'- cCAGcGCGGUGcgcuucucGGCGCGCacgGCGuCGCGCu -3'
miRNA:   3'- uGUCcCGCCGU--------UCGCGCG---CGU-GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 27770 0.66 0.283873
Target:  5'- --cGucCGGCucggacacguacacgAAGCGCGCGC-CGCGCa -3'
miRNA:   3'- uguCccGCCG---------------UUCGCGCGCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 33207 0.66 0.281086
Target:  5'- cGCcGGGCGcGCcgcaGAaCGUGCGC-CGCGCc -3'
miRNA:   3'- -UGuCCCGC-CG----UUcGCGCGCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 10332 0.66 0.281086
Target:  5'- cCAGGGCGuugaGCAAcGCGgcCGUGUugGCGg -3'
miRNA:   3'- uGUCCCGC----CGUU-CGC--GCGCGugCGCg -5'
26616 3' -62.4 NC_005357.1 + 10129 0.66 0.281086
Target:  5'- ---uGGCGGCGaugaGGU-CGCGCaACGCGCu -3'
miRNA:   3'- ugucCCGCCGU----UCGcGCGCG-UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 6622 0.66 0.274212
Target:  5'- aGCGGGcgcGUGGCGcuGCGCGCGgACaCGUa -3'
miRNA:   3'- -UGUCC---CGCCGUu-CGCGCGCgUGcGCG- -5'
26616 3' -62.4 NC_005357.1 + 20014 0.66 0.274212
Target:  5'- -aAGGcGUGGCuGGCGaaCGuCACGCGCu -3'
miRNA:   3'- ugUCC-CGCCGuUCGCgcGC-GUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 7065 0.66 0.274212
Target:  5'- --cGGGCGGC-AGCGuCGUuugaacagGCugGCGg -3'
miRNA:   3'- uguCCCGCCGuUCGC-GCG--------CGugCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.