miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 32417 0.73 0.09206
Target:  5'- cCAGGGCGGgGGcCGgGCGCGCG-GCa -3'
miRNA:   3'- uGUCCCGCCgUUcGCgCGCGUGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 31104 0.66 0.302525
Target:  5'- uGCAGGcCGGCGAGUG-GUGCGagauaGCGg -3'
miRNA:   3'- -UGUCCcGCCGUUCGCgCGCGUg----CGCg -5'
26616 3' -62.4 NC_005357.1 + 31020 0.66 0.302525
Target:  5'- --cGGGCuugccggccgaGGCAAucGCGCGgGCcaACGUGCg -3'
miRNA:   3'- uguCCCG-----------CCGUU--CGCGCgCG--UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 30912 0.69 0.181355
Target:  5'- cGCAGGGCcucacgccaGcGCAGGCGCGCccuuugcggugucGCAgGCGa -3'
miRNA:   3'- -UGUCCCG---------C-CGUUCGCGCG-------------CGUgCGCg -5'
26616 3' -62.4 NC_005357.1 + 29567 0.66 0.295241
Target:  5'- uCGGGGUaucgcgucaGGUcGGC-CGCGCccagGCGCGCg -3'
miRNA:   3'- uGUCCCG---------CCGuUCGcGCGCG----UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 29394 0.68 0.205685
Target:  5'- --cGGcGCGGUAGGCcagcagaaucuuggGCGCGUugcccACGCGCu -3'
miRNA:   3'- uguCC-CGCCGUUCG--------------CGCGCG-----UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 28756 0.66 0.288095
Target:  5'- cCAGcGCGGUGcgcuucucGGCGCGCacgGCGuCGCGCu -3'
miRNA:   3'- uGUCcCGCCGU--------UCGCGCG---CGU-GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 28623 0.7 0.142926
Target:  5'- gGCAGGa-GGCAcaGGCGCGCaaacugaccaGCaACGCGCa -3'
miRNA:   3'- -UGUCCcgCCGU--UCGCGCG----------CG-UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 28098 0.67 0.260871
Target:  5'- aGCAGGccCGGCAguucagccaaGGCGCGCGCcaguucagcaACGaCGUg -3'
miRNA:   3'- -UGUCCc-GCCGU----------UCGCGCGCG----------UGC-GCG- -5'
26616 3' -62.4 NC_005357.1 + 28004 0.68 0.207295
Target:  5'- aACAcGGuGCcGCAGGCGCGC-CugGCGa -3'
miRNA:   3'- -UGU-CC-CGcCGUUCGCGCGcGugCGCg -5'
26616 3' -62.4 NC_005357.1 + 27770 0.66 0.283873
Target:  5'- --cGucCGGCucggacacguacacgAAGCGCGCGC-CGCGCa -3'
miRNA:   3'- uguCccGCCG---------------UUCGCGCGCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 27437 0.67 0.254401
Target:  5'- cGCccGGCGGCcgcaggcccuGGCGCugguaugccaGCGCGcCGCGCa -3'
miRNA:   3'- -UGucCCGCCGu---------UCGCG----------CGCGU-GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 27309 0.69 0.19167
Target:  5'- cAUGGGGUcgggccugguaGGCAgcuauuacGGCGCGCGguCGCaGCa -3'
miRNA:   3'- -UGUCCCG-----------CCGU--------UCGCGCGCguGCG-CG- -5'
26616 3' -62.4 NC_005357.1 + 26257 0.68 0.207295
Target:  5'- gGCAcGGGCacccgccggccuGGUcGGCuCGCGCAuCGCGCg -3'
miRNA:   3'- -UGU-CCCG------------CCGuUCGcGCGCGU-GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 26046 0.74 0.073576
Target:  5'- aGCccGcGCGGCGGGCGCGCucCAUGCGCu -3'
miRNA:   3'- -UGucC-CGCCGUUCGCGCGc-GUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 25767 0.76 0.052375
Target:  5'- uGCuGGGCGGCGgcaacgauGGCcgcgauGCGCGCGgCGCGCu -3'
miRNA:   3'- -UGuCCCGCCGU--------UCG------CGCGCGU-GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 25070 0.67 0.229831
Target:  5'- --cGGGCaGCAucgccacccAGCGCaGCGCGCccgGCGCc -3'
miRNA:   3'- uguCCCGcCGU---------UCGCG-CGCGUG---CGCG- -5'
26616 3' -62.4 NC_005357.1 + 25000 0.66 0.295241
Target:  5'- gGCGGGGCcacugcucaagGGCGA-CGUGgGCGC-CGCu -3'
miRNA:   3'- -UGUCCCG-----------CCGUUcGCGCgCGUGcGCG- -5'
26616 3' -62.4 NC_005357.1 + 24628 0.72 0.100069
Target:  5'- uGCA-GGCGGaauacuGCGCGCGCuucuauccguucGCGCGCg -3'
miRNA:   3'- -UGUcCCGCCguu---CGCGCGCG------------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 24274 0.74 0.080048
Target:  5'- aACAGGGCuauuucGGCAAGCuGCGCGagcCGgGCg -3'
miRNA:   3'- -UGUCCCG------CCGUUCG-CGCGCgu-GCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.