Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26617 | 3' | -55 | NC_005357.1 | + | 7534 | 0.65 | 0.707728 |
Target: 5'- aCCGUGCgcuCGgcgGCGUgCUCGAuCCGcgGCg -3' miRNA: 3'- -GGUACG---GCa--CGCG-GAGCUuGGCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 2761 | 0.65 | 0.707728 |
Target: 5'- gCGUGCCGaccacUGCcgacaCCUCGA--CGUUGCg -3' miRNA: 3'- gGUACGGC-----ACGc----GGAGCUugGCAACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 9580 | 0.66 | 0.696817 |
Target: 5'- ---cGCCGaccgucUGCgGCCaggCGaAGCCGUUGCg -3' miRNA: 3'- gguaCGGC------ACG-CGGa--GC-UUGGCAACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 36864 | 0.66 | 0.696817 |
Target: 5'- gCCAgcGuuG-GCGCCgUCGAuACCGUgGCg -3' miRNA: 3'- -GGUa-CggCaCGCGG-AGCU-UGGCAaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 1758 | 0.66 | 0.692434 |
Target: 5'- gUCAUgGCCGgccUGCGCCuggcgcgUCGGGCCGauacguucgaugauUUGCu -3' miRNA: 3'- -GGUA-CGGC---ACGCGG-------AGCUUGGC--------------AACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 19004 | 0.66 | 0.685843 |
Target: 5'- uCCcgGCCG-GCGUCgcaCuGACCGgcGCg -3' miRNA: 3'- -GGuaCGGCaCGCGGa--GcUUGGCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 28275 | 0.66 | 0.685843 |
Target: 5'- aCCAUGaCCGcGCGCUg-GGACaCGgcGCa -3' miRNA: 3'- -GGUAC-GGCaCGCGGagCUUG-GCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 34661 | 0.66 | 0.685843 |
Target: 5'- ---cGCCG-GCGCagaUCGcGCCGgUGCu -3' miRNA: 3'- gguaCGGCaCGCGg--AGCuUGGCaACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 30295 | 0.66 | 0.674815 |
Target: 5'- ---cGUCGgguaGCGCCccugCGAGCCGcuUUGCg -3' miRNA: 3'- gguaCGGCa---CGCGGa---GCUUGGC--AACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 36087 | 0.66 | 0.674815 |
Target: 5'- uUCggGCCGgGCGCUUUG-GCUGggGCg -3' miRNA: 3'- -GGuaCGGCaCGCGGAGCuUGGCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 41748 | 0.66 | 0.674815 |
Target: 5'- gCCcgGCCG-GCGCC----GCCGUagGCg -3' miRNA: 3'- -GGuaCGGCaCGCGGagcuUGGCAa-CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 34585 | 0.66 | 0.663747 |
Target: 5'- uUCAaGCgCGUGCGCCUgGucAUCGU-GCa -3' miRNA: 3'- -GGUaCG-GCACGCGGAgCu-UGGCAaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 9225 | 0.66 | 0.663747 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGU-GCc -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 22978 | 0.66 | 0.652648 |
Target: 5'- aCUAUGgCGUGCaGCC-CGAgaagucccgcACCGU-GCa -3' miRNA: 3'- -GGUACgGCACG-CGGaGCU----------UGGCAaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 34236 | 0.66 | 0.652648 |
Target: 5'- ---gGCCGUGCGCgaUGAaaucGCCGgcaGCa -3' miRNA: 3'- gguaCGGCACGCGgaGCU----UGGCaa-CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 15138 | 0.66 | 0.652648 |
Target: 5'- cCCAUGCUGgcggcggaUGCGCCcagggCGAcgGCUgauGUUGCu -3' miRNA: 3'- -GGUACGGC--------ACGCGGa----GCU--UGG---CAACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 14716 | 0.67 | 0.64153 |
Target: 5'- uCCAUGaCCG-GCGg--CGAGCCGcUGCc -3' miRNA: 3'- -GGUAC-GGCaCGCggaGCUUGGCaACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 33051 | 0.67 | 0.64153 |
Target: 5'- cCCGcgugcUGUCGUGCGCUucaUCGggUCGc-GCa -3' miRNA: 3'- -GGU-----ACGGCACGCGG---AGCuuGGCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 28665 | 0.67 | 0.64153 |
Target: 5'- uCgGUGCCG-GCgGCCUCGccAGCgCGgcGCg -3' miRNA: 3'- -GgUACGGCaCG-CGGAGC--UUG-GCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 27498 | 0.67 | 0.64153 |
Target: 5'- -gAUGCCG-GCgGCCUCG-GCCGccaGCu -3' miRNA: 3'- ggUACGGCaCG-CGGAGCuUGGCaa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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