miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26620 5' -53.9 NC_005357.1 + 37638 0.66 0.724109
Target:  5'- cAgCGCCaGCCGGCGUGc--UGgGCGCa -3'
miRNA:   3'- aUgGCGG-CGGUUGUACuucAUgCGCG- -5'
26620 5' -53.9 NC_005357.1 + 8055 0.66 0.724109
Target:  5'- aACCGCUGCuCGACcaucAGUucaccgcccaagGCGCGCa -3'
miRNA:   3'- aUGGCGGCG-GUUGuacuUCA------------UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 15569 0.66 0.724109
Target:  5'- aUGgCGCCGUCA--GUGAcg-ACGCGCu -3'
miRNA:   3'- -AUgGCGGCGGUugUACUucaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 32382 0.66 0.724109
Target:  5'- gGCCGCCcagcaggaaGCCAGCAccGAaaaaaAGccGCGCGCc -3'
miRNA:   3'- aUGGCGG---------CGGUUGUa-CU-----UCa-UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 27590 0.66 0.71749
Target:  5'- cGCUgGCCGCCAACGgcaucgaccugggcGAAGgcaGCGCc -3'
miRNA:   3'- aUGG-CGGCGGUUGUa-------------CUUCaugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18046 0.66 0.713059
Target:  5'- gGCUGCUuggggGCCuuaccGGCGcGggGUGCGUGCu -3'
miRNA:   3'- aUGGCGG-----CGG-----UUGUaCuuCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 19635 0.66 0.713059
Target:  5'- gGCCGCgacaucgGCCAGCGUcGGGUugGUGg -3'
miRNA:   3'- aUGGCGg------CGGUUGUAcUUCAugCGCg -5'
26620 5' -53.9 NC_005357.1 + 8120 0.66 0.713059
Target:  5'- cACCGCgCgGCCGGCGUu-GGUuguggGCGUGCg -3'
miRNA:   3'- aUGGCG-G-CGGUUGUAcuUCA-----UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 40035 0.66 0.713059
Target:  5'- uUGCCGCC-CUGACAa-GGGUACGCacGCg -3'
miRNA:   3'- -AUGGCGGcGGUUGUacUUCAUGCG--CG- -5'
26620 5' -53.9 NC_005357.1 + 20193 0.66 0.713059
Target:  5'- cAUCGCgGCCGACAaccAGGgcCGCGUc -3'
miRNA:   3'- aUGGCGgCGGUUGUac-UUCauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 40277 0.66 0.713059
Target:  5'- --aUGCCGCCAGCAaGAccauaaAGUGCcUGCa -3'
miRNA:   3'- augGCGGCGGUUGUaCU------UCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 38399 0.66 0.701923
Target:  5'- cGCCGCgGCCGGCuuUGAAGccuauCGCu- -3'
miRNA:   3'- aUGGCGgCGGUUGu-ACUUCau---GCGcg -5'
26620 5' -53.9 NC_005357.1 + 10543 0.66 0.701923
Target:  5'- -uCCGCCGCCAcgcGCAacGGGUAUugcuggaacaGCGCc -3'
miRNA:   3'- auGGCGGCGGU---UGUacUUCAUG----------CGCG- -5'
26620 5' -53.9 NC_005357.1 + 6415 0.66 0.701923
Target:  5'- -gUCGCgGCC--CAUGucGUugGCGCc -3'
miRNA:   3'- auGGCGgCGGuuGUACuuCAugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 14847 0.66 0.701923
Target:  5'- cUGgCGCCGCCugcuGCcgGugcccuuUACGCGCa -3'
miRNA:   3'- -AUgGCGGCGGu---UGuaCuuc----AUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 33528 0.66 0.700806
Target:  5'- aGCgCGCCGCCGAUagcgccauucacaAUGAugccCGCGCc -3'
miRNA:   3'- aUG-GCGGCGGUUG-------------UACUucauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 29891 0.66 0.690715
Target:  5'- cACCcCCcCCGGCAUGAcaggccguaccAGUuCGCGCa -3'
miRNA:   3'- aUGGcGGcGGUUGUACU-----------UCAuGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 28613 0.66 0.690715
Target:  5'- -uCCGCCGaguGGCAgGAGGcacagGCGCGCa -3'
miRNA:   3'- auGGCGGCgg-UUGUaCUUCa----UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 5890 0.66 0.679446
Target:  5'- gGCauagGUCGCCAGCGUGGugaguGUGC-CGCc -3'
miRNA:   3'- aUGg---CGGCGGUUGUACUu----CAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 13346 0.66 0.679446
Target:  5'- -gUCGCCGCC-----GAAGU-CGCGCa -3'
miRNA:   3'- auGGCGGCGGuuguaCUUCAuGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.