miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26634 3' -57.8 NC_005808.1 + 19829 0.66 0.51972
Target:  5'- --aGUgaa-GACCGCCUCGU-GGCCGg -3'
miRNA:   3'- uggCGaaagCUGGCGGAGUAgCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 5714 0.66 0.51972
Target:  5'- uACCGCUgguuuCCGCCgugUA-CGGCCAc -3'
miRNA:   3'- -UGGCGAaagcuGGCGGa--GUaGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 16326 0.66 0.51972
Target:  5'- gGCCGCgcgCGAggccaacgccauCCGCCaUAUCGuGCCGc -3'
miRNA:   3'- -UGGCGaaaGCU------------GGCGGaGUAGC-CGGU- -5'
26634 3' -57.8 NC_005808.1 + 34062 0.66 0.51972
Target:  5'- cGCgGCUgUCGAgCGUUUCAUCGccuacGCCAc -3'
miRNA:   3'- -UGgCGAaAGCUgGCGGAGUAGC-----CGGU- -5'
26634 3' -57.8 NC_005808.1 + 23541 0.66 0.51972
Target:  5'- cGCaCGCggUCGAUgGCC---UCGGCCGa -3'
miRNA:   3'- -UG-GCGaaAGCUGgCGGaguAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 33590 0.66 0.516551
Target:  5'- cACCGCUggCGAauccggcacggccaCCGCUggcggCA-CGGCCAc -3'
miRNA:   3'- -UGGCGAaaGCU--------------GGCGGa----GUaGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 23174 0.66 0.509187
Target:  5'- uACCGCUgUCGccgugggcGCCGCCguuggCGUCGGg-- -3'
miRNA:   3'- -UGGCGAaAGC--------UGGCGGa----GUAGCCggu -5'
26634 3' -57.8 NC_005808.1 + 21577 0.66 0.498744
Target:  5'- uGCCGC--UCGGCCaCUUCGguggCGGUCAu -3'
miRNA:   3'- -UGGCGaaAGCUGGcGGAGUa---GCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 32439 0.66 0.498744
Target:  5'- cCUGCUgggCGGCCgggGCCUCggCGGCg- -3'
miRNA:   3'- uGGCGAaa-GCUGG---CGGAGuaGCCGgu -5'
26634 3' -57.8 NC_005808.1 + 813 0.66 0.488398
Target:  5'- cGCCGCgccCaGCCcuuGCCgaaCGUCGGCCAg -3'
miRNA:   3'- -UGGCGaaaGcUGG---CGGa--GUAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 35539 0.66 0.478154
Target:  5'- cCCGCUcaCGuCCGCgaagUCGUCGGCUg -3'
miRNA:   3'- uGGCGAaaGCuGGCGg---AGUAGCCGGu -5'
26634 3' -57.8 NC_005808.1 + 5272 0.66 0.478154
Target:  5'- cACCGUguugaugUUCG-CgGCgUUGUCGGCCAc -3'
miRNA:   3'- -UGGCGa------AAGCuGgCGgAGUAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 1348 0.66 0.478154
Target:  5'- aGCCGUggUCGGCgGCCUugcgCAUcCGGCg- -3'
miRNA:   3'- -UGGCGaaAGCUGgCGGA----GUA-GCCGgu -5'
26634 3' -57.8 NC_005808.1 + 8621 0.66 0.478154
Target:  5'- -gCGCUUcUCGGCCGCUgcgguggcgaggUCGcCGGCCu -3'
miRNA:   3'- ugGCGAA-AGCUGGCGG------------AGUaGCCGGu -5'
26634 3' -57.8 NC_005808.1 + 11151 0.66 0.472058
Target:  5'- uGCUGCUg--GGCCGCCUgcgCAcguugcgugcgcuggUCGGCCGu -3'
miRNA:   3'- -UGGCGAaagCUGGCGGA---GU---------------AGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 29559 0.66 0.468017
Target:  5'- cGCCGUgcUCGGgguaUCGCgUCAggUCGGCCGc -3'
miRNA:   3'- -UGGCGaaAGCU----GGCGgAGU--AGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 16721 0.66 0.468017
Target:  5'- aACCGa--UCcGCUcCCUCGUCGGCCGg -3'
miRNA:   3'- -UGGCgaaAGcUGGcGGAGUAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 3764 0.67 0.448082
Target:  5'- cGCCGCUg--GACguaGCCUCGgUCGuGCCGa -3'
miRNA:   3'- -UGGCGAaagCUGg--CGGAGU-AGC-CGGU- -5'
26634 3' -57.8 NC_005808.1 + 31093 0.67 0.438292
Target:  5'- cCCGCg--CGAUUGCCUCGgcCGGCa- -3'
miRNA:   3'- uGGCGaaaGCUGGCGGAGUa-GCCGgu -5'
26634 3' -57.8 NC_005808.1 + 1464 0.67 0.438292
Target:  5'- -gCGCggUCGGCgGCCUCcuggcaGGCCGg -3'
miRNA:   3'- ugGCGaaAGCUGgCGGAGuag---CCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.