miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 3' -65.8 NC_005808.1 + 34439 0.66 0.205841
Target:  5'- uUCGU--GCGCgGCCGuGCCCucguCGGCGAAg -3'
miRNA:   3'- -AGCGgcCGUG-CGGC-CGGGu---GCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 28639 0.66 0.205841
Target:  5'- cUGCCGGUggccgacgugcGCGCCgcgauGGCCgGCGGCc-- -3'
miRNA:   3'- aGCGGCCG-----------UGCGG-----CCGGgUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 14341 0.66 0.205841
Target:  5'- cUGCCgGGCcUGCUGGUUCGCGGUGu- -3'
miRNA:   3'- aGCGG-CCGuGCGGCCGGGUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 27247 0.66 0.205841
Target:  5'- -aGCCGGCGCcCCaGGCUCuuGGcCGAGg -3'
miRNA:   3'- agCGGCCGUGcGG-CCGGGugCC-GCUU- -5'
26635 3' -65.8 NC_005808.1 + 31773 0.66 0.200659
Target:  5'- gCGCgCGGCGgGCUGGUCa--GGCGGu -3'
miRNA:   3'- aGCG-GCCGUgCGGCCGGgugCCGCUu -5'
26635 3' -65.8 NC_005808.1 + 22863 0.66 0.200659
Target:  5'- -aGuCCGGCACcaugcugaCCGGCCCGCagGGCGu- -3'
miRNA:   3'- agC-GGCCGUGc-------GGCCGGGUG--CCGCuu -5'
26635 3' -65.8 NC_005808.1 + 7784 0.66 0.200659
Target:  5'- gCGCCGGCGuccacccuuCGCC-GCCCAgcaGGCGc- -3'
miRNA:   3'- aGCGGCCGU---------GCGGcCGGGUg--CCGCuu -5'
26635 3' -65.8 NC_005808.1 + 4075 0.66 0.195592
Target:  5'- aCGCUGGUG-GCCGGCgcguUUugGGCGGAc -3'
miRNA:   3'- aGCGGCCGUgCGGCCG----GGugCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 12096 0.66 0.195592
Target:  5'- aCGCUgGGCAagaccuCGCCGGCC-ACGGCc-- -3'
miRNA:   3'- aGCGG-CCGU------GCGGCCGGgUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 8207 0.66 0.195592
Target:  5'- gCGCaCGGCcucguagucGCGCUGGUCgGCGGCc-- -3'
miRNA:   3'- aGCG-GCCG---------UGCGGCCGGgUGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 33658 0.66 0.195091
Target:  5'- cCGCUGGCGaauCCGGCacggccaCCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGUgc-GGCCG-------GGUG-CCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 25684 0.66 0.190637
Target:  5'- -aGCCGGCggauuucggcaACGCUGcucauaccaGcCCCGCGGCGGGg -3'
miRNA:   3'- agCGGCCG-----------UGCGGC---------C-GGGUGCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 38613 0.66 0.190637
Target:  5'- gCGagCGGCAgGCCagcGGCCCAgGGgGGAu -3'
miRNA:   3'- aGCg-GCCGUgCGG---CCGGGUgCCgCUU- -5'
26635 3' -65.8 NC_005808.1 + 33568 0.66 0.190637
Target:  5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 33520 0.66 0.190637
Target:  5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 11835 0.66 0.190637
Target:  5'- -aGaCCGGcCGCGCCGcgguuGgCCugGGCGAAc -3'
miRNA:   3'- agC-GGCC-GUGCGGC-----CgGGugCCGCUU- -5'
26635 3' -65.8 NC_005808.1 + 6244 0.66 0.190637
Target:  5'- -gGCCuGCACGCCGGUa-ACGGUGc- -3'
miRNA:   3'- agCGGcCGUGCGGCCGggUGCCGCuu -5'
26635 3' -65.8 NC_005808.1 + 6377 0.66 0.186271
Target:  5'- aCGUCGGCAaucaggcgcaggccgGCCGGCCCgguguagucGCGGCc-- -3'
miRNA:   3'- aGCGGCCGUg--------------CGGCCGGG---------UGCCGcuu -5'
26635 3' -65.8 NC_005808.1 + 31026 0.66 0.185792
Target:  5'- cUUGCCGGCcgaggcaaucGCGCgGGCCaACGugcGCGAAg -3'
miRNA:   3'- -AGCGGCCG----------UGCGgCCGGgUGC---CGCUU- -5'
26635 3' -65.8 NC_005808.1 + 9067 0.66 0.185792
Target:  5'- cCGCCuGCugGaaGcGCCCccgcGCGGCGAGg -3'
miRNA:   3'- aGCGGcCGugCggC-CGGG----UGCCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.