Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26637 | 5' | -51.6 | NC_005808.1 | + | 7705 | 0.68 | 0.719738 |
Target: 5'- --aGGAGCCGGCGuggguCGAGcCGCGc -3' miRNA: 3'- gagUUUCGGCCGUuaau-GCUC-GCGCc -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 32181 | 0.68 | 0.708583 |
Target: 5'- gUCGAGGUCGGCAGcgGCcAGgGCGu -3' miRNA: 3'- gAGUUUCGGCCGUUaaUGcUCgCGCc -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 40906 | 0.69 | 0.663276 |
Target: 5'- gUCAuGGCCGGCc--UGCGccuGGCGCGu -3' miRNA: 3'- gAGUuUCGGCCGuuaAUGC---UCGCGCc -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 27549 | 0.7 | 0.638091 |
Target: 5'- -----cGCCGGCAuccucgcguggUGCGuGCGCGGc -3' miRNA: 3'- gaguuuCGGCCGUua---------AUGCuCGCGCC- -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 32135 | 0.67 | 0.801509 |
Target: 5'- -gCGGGGCCGaugagcauggcgucGCAuaguugUGCGAGCGCGc -3' miRNA: 3'- gaGUUUCGGC--------------CGUua----AUGCUCGCGCc -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 22322 | 0.68 | 0.763287 |
Target: 5'- gCUgAcGGCCGGCGAaUACGccauCGCGGc -3' miRNA: 3'- -GAgUuUCGGCCGUUaAUGCuc--GCGCC- -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 13601 | 0.69 | 0.697347 |
Target: 5'- gUCAGgcGGCCGaCAGUU-CG-GCGCGGa -3' miRNA: 3'- gAGUU--UCGGCcGUUAAuGCuCGCGCC- -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 5272 | 0.7 | 0.62892 |
Target: 5'- cCUCGAcgugggcacgguAGCCGGCAAUaucgACGAcGUGCaGGc -3' miRNA: 3'- -GAGUU------------UCGGCCGUUAa---UGCU-CGCG-CC- -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 20280 | 0.68 | 0.752586 |
Target: 5'- -cCAAcAGCCGGCc---GCGGGCGCu- -3' miRNA: 3'- gaGUU-UCGGCCGuuaaUGCUCGCGcc -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 19244 | 0.7 | 0.617459 |
Target: 5'- aUCGAcGCCGGCGGc-ACGGGCaGCGa -3' miRNA: 3'- gAGUUuCGGCCGUUaaUGCUCG-CGCc -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 19818 | 0.68 | 0.706342 |
Target: 5'- cCUCGuGGCCGGCAacaacggcaaccAgcccaagcaggGCGAuGCGCGGc -3' miRNA: 3'- -GAGUuUCGGCCGU------------Uaa---------UGCU-CGCGCC- -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 21231 | 0.68 | 0.730799 |
Target: 5'- -gCAgcAGGCCGcGCuGUUGaaccaGGGCGCGGa -3' miRNA: 3'- gaGU--UUCGGC-CGuUAAUg----CUCGCGCC- -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 36581 | 0.69 | 0.697347 |
Target: 5'- cCUCGAAGUCGu------CGAGCGCGGc -3' miRNA: 3'- -GAGUUUCGGCcguuaauGCUCGCGCC- -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 42422 | 0.69 | 0.67468 |
Target: 5'- -gUAGGGCCGGCGGUaGCGAauccccagGCGCu- -3' miRNA: 3'- gaGUUUCGGCCGUUAaUGCU--------CGCGcc -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 24800 | 0.69 | 0.65184 |
Target: 5'- gUCGAGGCCGcGCA------GGCGCGGu -3' miRNA: 3'- gAGUUUCGGC-CGUuaaugcUCGCGCC- -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 7082 | 0.69 | 0.648404 |
Target: 5'- aUCAAcGCCaaguccucguucauGGCGAau-CGGGCGCGGa -3' miRNA: 3'- gAGUUuCGG--------------CCGUUaauGCUCGCGCC- -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 18219 | 0.66 | 0.842589 |
Target: 5'- -aCAGGGCuauuuCGGCAAgcugcGCGAGC-CGGg -3' miRNA: 3'- gaGUUUCG-----GCCGUUaa---UGCUCGcGCC- -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 25569 | 0.67 | 0.804501 |
Target: 5'- cCUCAucGCgGGCcugacccugaccAAgcACGAGCGCGc -3' miRNA: 3'- -GAGUuuCGgCCG------------UUaaUGCUCGCGCc -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 37352 | 0.67 | 0.784237 |
Target: 5'- gUCGAGGCCGuaGGccGCGAGCacGUGGc -3' miRNA: 3'- gAGUUUCGGCcgUUaaUGCUCG--CGCC- -5' |
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26637 | 5' | -51.6 | NC_005808.1 | + | 15179 | 0.68 | 0.763287 |
Target: 5'- gUC-GGGCCugguaGGCAgcuAUUACGGcGCGCGGu -3' miRNA: 3'- gAGuUUCGG-----CCGU---UAAUGCU-CGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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