miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26640 3' -56.4 NC_005808.1 + 42038 0.66 0.625699
Target:  5'- ---gGCCUCaGCCuCGGCGCgggugaacgggucagGCGGGGg -3'
miRNA:   3'- gaugUGGAGcUGGuGCCGCG---------------CGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 40153 0.66 0.621288
Target:  5'- -aGCGCCUgGGCCGCaguuucGGCGCcuucaaauCGAGGu -3'
miRNA:   3'- gaUGUGGAgCUGGUG------CCGCGc-------GUUCC- -5'
26640 3' -56.4 NC_005808.1 + 34079 0.66 0.621288
Target:  5'- -gACACgaCGGUCACGGCGacCGUggGGa -3'
miRNA:   3'- gaUGUGgaGCUGGUGCCGC--GCGuuCC- -5'
26640 3' -56.4 NC_005808.1 + 29030 0.66 0.620186
Target:  5'- -cGCGCUUCGGCCAggucgauacccacCGGCG-GCucguAGGc -3'
miRNA:   3'- gaUGUGGAGCUGGU-------------GCCGCgCGu---UCC- -5'
26640 3' -56.4 NC_005808.1 + 41002 0.66 0.620186
Target:  5'- -aACGCaCUCGACCACcaggaaGGCgGCGgccacuaCAAGGa -3'
miRNA:   3'- gaUGUG-GAGCUGGUG------CCG-CGC-------GUUCC- -5'
26640 3' -56.4 NC_005808.1 + 27330 0.66 0.620185
Target:  5'- aCUGCgguucauuGCCUCGGCCAagagccUGGgGCGCcggcuggacagcaAAGGa -3'
miRNA:   3'- -GAUG--------UGGAGCUGGU------GCCgCGCG-------------UUCC- -5'
26640 3' -56.4 NC_005808.1 + 23231 0.66 0.610268
Target:  5'- ---gGCCUCGGCCACcgacCGCGCcucgcuGGGg -3'
miRNA:   3'- gaugUGGAGCUGGUGcc--GCGCGu-----UCC- -5'
26640 3' -56.4 NC_005808.1 + 25472 0.66 0.610268
Target:  5'- -cGCGCCUcaCGAUgAgGGCGCGCucgugcuuggucAGGGu -3'
miRNA:   3'- gaUGUGGA--GCUGgUgCCGCGCG------------UUCC- -5'
26640 3' -56.4 NC_005808.1 + 9868 0.66 0.610268
Target:  5'- -cGCugCUUGACUgguuCGGCGUGCGc-- -3'
miRNA:   3'- gaUGugGAGCUGGu---GCCGCGCGUucc -5'
26640 3' -56.4 NC_005808.1 + 14810 0.66 0.610268
Target:  5'- cCUGCACCUCG---GCGGCGCuGCc--- -3'
miRNA:   3'- -GAUGUGGAGCuggUGCCGCG-CGuucc -5'
26640 3' -56.4 NC_005808.1 + 36762 0.66 0.599267
Target:  5'- --cCACUUCGACCgcACGGUGCuGCGGc- -3'
miRNA:   3'- gauGUGGAGCUGG--UGCCGCG-CGUUcc -5'
26640 3' -56.4 NC_005808.1 + 24208 0.66 0.588294
Target:  5'- -gGCGCUg-GGCCA-GGCGCGCAGccGGc -3'
miRNA:   3'- gaUGUGGagCUGGUgCCGCGCGUU--CC- -5'
26640 3' -56.4 NC_005808.1 + 6702 0.66 0.588294
Target:  5'- -gACACUcCGGCCAa-GCGCGCGAa- -3'
miRNA:   3'- gaUGUGGaGCUGGUgcCGCGCGUUcc -5'
26640 3' -56.4 NC_005808.1 + 16406 0.66 0.588294
Target:  5'- --gUugCUCGAaguaggaCACGGC-CGCGGGGu -3'
miRNA:   3'- gauGugGAGCUg------GUGCCGcGCGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 23494 0.66 0.587198
Target:  5'- -cGCAUCcCGGCCGgcgucgcacugacCGGCGCGCucaucAAGGu -3'
miRNA:   3'- gaUGUGGaGCUGGU-------------GCCGCGCG-----UUCC- -5'
26640 3' -56.4 NC_005808.1 + 11100 0.66 0.585009
Target:  5'- -aGCACCuugUCGGCUGCGGCcaauugguucaaacGUGCGAGc -3'
miRNA:   3'- gaUGUGG---AGCUGGUGCCG--------------CGCGUUCc -5'
26640 3' -56.4 NC_005808.1 + 28223 0.66 0.577358
Target:  5'- -cACGCCgaCGACCACGcGCgggucggacuGCGCcAGGc -3'
miRNA:   3'- gaUGUGGa-GCUGGUGC-CG----------CGCGuUCC- -5'
26640 3' -56.4 NC_005808.1 + 27227 0.66 0.577358
Target:  5'- -gGCAUC-CGcgUGCGGCGCGUggGGg -3'
miRNA:   3'- gaUGUGGaGCugGUGCCGCGCGuuCC- -5'
26640 3' -56.4 NC_005808.1 + 19570 0.66 0.577358
Target:  5'- -aGCACaa-GACCACGGUuCGCAGcGGc -3'
miRNA:   3'- gaUGUGgagCUGGUGCCGcGCGUU-CC- -5'
26640 3' -56.4 NC_005808.1 + 30611 0.67 0.567554
Target:  5'- -gGCAUCggcgaucuguucuugCGACCAgcCGGCGCGaauGAGGg -3'
miRNA:   3'- gaUGUGGa--------------GCUGGU--GCCGCGCg--UUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.