miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26648 3' -51.8 NC_005808.1 + 25381 0.66 0.852919
Target:  5'- --cCGgCGACGAGCgccggUGGCaGGGCCGg -3'
miRNA:   3'- ugaGCgGCUGUUUGa----AUCGgCUUGGC- -5'
26648 3' -51.8 NC_005808.1 + 31024 0.66 0.852919
Target:  5'- gGCUUGCCGGCcgAGGCaaucGCgCGGGCCa -3'
miRNA:   3'- -UGAGCGGCUG--UUUGaau-CG-GCUUGGc -5'
26648 3' -51.8 NC_005808.1 + 32707 0.66 0.852919
Target:  5'- uGCUCGCCGcgugcaauCAGGCgauggagGGCUGAcGCCa -3'
miRNA:   3'- -UGAGCGGCu-------GUUUGaa-----UCGGCU-UGGc -5'
26648 3' -51.8 NC_005808.1 + 679 0.66 0.844016
Target:  5'- gGC-CGCCuACGgcGGCgccGGCCGGGCCGc -3'
miRNA:   3'- -UGaGCGGcUGU--UUGaa-UCGGCUUGGC- -5'
26648 3' -51.8 NC_005808.1 + 26071 0.66 0.844016
Target:  5'- --gCGCuCGGCGAACUcgGGgCGGGCCu -3'
miRNA:   3'- ugaGCG-GCUGUUUGAa-UCgGCUUGGc -5'
26648 3' -51.8 NC_005808.1 + 23759 0.66 0.844016
Target:  5'- --aUGCCGGCGccACcgGGCCGAugCGc -3'
miRNA:   3'- ugaGCGGCUGUu-UGaaUCGGCUugGC- -5'
26648 3' -51.8 NC_005808.1 + 37989 0.66 0.844016
Target:  5'- --cCGCCGACAucauc-GCCGAgGCCGa -3'
miRNA:   3'- ugaGCGGCUGUuugaauCGGCU-UGGC- -5'
26648 3' -51.8 NC_005808.1 + 31311 0.66 0.844016
Target:  5'- -gUCGcCCGGCucguAGCUgGGCCGcgcGCCGg -3'
miRNA:   3'- ugAGC-GGCUGu---UUGAaUCGGCu--UGGC- -5'
26648 3' -51.8 NC_005808.1 + 18465 0.66 0.843113
Target:  5'- cGCggCGCCGGC-GGCgucGGCCGAuucguccACCGu -3'
miRNA:   3'- -UGa-GCGGCUGuUUGaa-UCGGCU-------UGGC- -5'
26648 3' -51.8 NC_005808.1 + 31391 0.66 0.834872
Target:  5'- -gUCGCCG-CGAcCUgggauuccAGCCGGGCCa -3'
miRNA:   3'- ugAGCGGCuGUUuGAa-------UCGGCUUGGc -5'
26648 3' -51.8 NC_005808.1 + 33735 0.66 0.815901
Target:  5'- gAUUCGCCaGCGG---UGGCCGuGCCGg -3'
miRNA:   3'- -UGAGCGGcUGUUugaAUCGGCuUGGC- -5'
26648 3' -51.8 NC_005808.1 + 14956 0.66 0.815901
Target:  5'- -aUCGCCGcGCAGACccugaaAGCCGGGCa- -3'
miRNA:   3'- ugAGCGGC-UGUUUGaa----UCGGCUUGgc -5'
26648 3' -51.8 NC_005808.1 + 33711 0.66 0.815901
Target:  5'- gAUUCGCCaGCGG---UGGCCGuGCCGg -3'
miRNA:   3'- -UGAGCGGcUGUUugaAUCGGCuUGGC- -5'
26648 3' -51.8 NC_005808.1 + 24395 0.66 0.806096
Target:  5'- aACUCGCUGcGCAAguugaagaaGCgcAGCCGGcCCGa -3'
miRNA:   3'- -UGAGCGGC-UGUU---------UGaaUCGGCUuGGC- -5'
26648 3' -51.8 NC_005808.1 + 9360 0.66 0.805104
Target:  5'- -gUCGCCGAgGAagucaauGCgcAGCCGGuguACCGg -3'
miRNA:   3'- ugAGCGGCUgUU-------UGaaUCGGCU---UGGC- -5'
26648 3' -51.8 NC_005808.1 + 37344 0.67 0.796094
Target:  5'- cGCaUUGCCGACcccGACcugccGGCCGAACUGc -3'
miRNA:   3'- -UG-AGCGGCUGu--UUGaa---UCGGCUUGGC- -5'
26648 3' -51.8 NC_005808.1 + 12083 0.67 0.796094
Target:  5'- cCUCGCCGGCcacggccgcGCUgcUGGCCGAcguggaaaagGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-------UGA--AUCGGCU----------UGGc -5'
26648 3' -51.8 NC_005808.1 + 18578 0.67 0.796094
Target:  5'- cGCUCGCgGugAcGGCcUGGCCGu-CCGa -3'
miRNA:   3'- -UGAGCGgCugU-UUGaAUCGGCuuGGC- -5'
26648 3' -51.8 NC_005808.1 + 25711 0.67 0.785906
Target:  5'- --aCGCCGGCAGAacu-GCCGAGgUGg -3'
miRNA:   3'- ugaGCGGCUGUUUgaauCGGCUUgGC- -5'
26648 3' -51.8 NC_005808.1 + 17725 0.67 0.785906
Target:  5'- aGCcCGCCGACGcaucaaGAUcgUGGCCGuacuGCCGc -3'
miRNA:   3'- -UGaGCGGCUGU------UUGa-AUCGGCu---UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.