miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26653 3' -56.4 NC_005808.1 + 17897 0.66 0.586638
Target:  5'- -gUGGCGGGCaucaaCC-CGCCCGAGGg -3'
miRNA:   3'- aaGCCGCUUGaca--GGuGCGGGCUUCg -5'
26653 3' -56.4 NC_005808.1 + 7496 0.66 0.586638
Target:  5'- gUCGaG-GAAgUGUCCggGCGCCCGcuGCu -3'
miRNA:   3'- aAGC-CgCUUgACAGG--UGCGGGCuuCG- -5'
26653 3' -56.4 NC_005808.1 + 9100 0.66 0.579992
Target:  5'- gUUCGGCuuuacgucuggugacGAACUGgugcgCCGCcuGCUgGAAGCg -3'
miRNA:   3'- -AAGCCG---------------CUUGACa----GGUG--CGGgCUUCG- -5'
26653 3' -56.4 NC_005808.1 + 39342 0.66 0.57557
Target:  5'- -cUGGCGcggaAGCUGaaUCC-CGCCgGggGCu -3'
miRNA:   3'- aaGCCGC----UUGAC--AGGuGCGGgCuuCG- -5'
26653 3' -56.4 NC_005808.1 + 34585 0.66 0.57557
Target:  5'- -cCGGCGaAGCUGgcgCCaagggcACGUCCGAcGCc -3'
miRNA:   3'- aaGCCGC-UUGACa--GG------UGCGGGCUuCG- -5'
26653 3' -56.4 NC_005808.1 + 14817 0.66 0.57557
Target:  5'- cUCGGCGGcGCUG-CCuuCGCCC-AGGUc -3'
miRNA:   3'- aAGCCGCU-UGACaGGu-GCGGGcUUCG- -5'
26653 3' -56.4 NC_005808.1 + 27417 0.66 0.564549
Target:  5'- gUCGcGCGc-CUGgcgcaCCGCGCCCGGcGGCc -3'
miRNA:   3'- aAGC-CGCuuGACa----GGUGCGGGCU-UCG- -5'
26653 3' -56.4 NC_005808.1 + 10367 0.66 0.564549
Target:  5'- -cUGGCGAAgUGg-CAC-CCCGAGGUg -3'
miRNA:   3'- aaGCCGCUUgACagGUGcGGGCUUCG- -5'
26653 3' -56.4 NC_005808.1 + 804 0.66 0.553584
Target:  5'- -cCGGCGAcGCg--CCGCGCCC--AGCc -3'
miRNA:   3'- aaGCCGCU-UGacaGGUGCGGGcuUCG- -5'
26653 3' -56.4 NC_005808.1 + 26053 0.66 0.553584
Target:  5'- -gCGGCGGGCgcgcUCCAUGCgcucggcgaacUCGggGCg -3'
miRNA:   3'- aaGCCGCUUGac--AGGUGCG-----------GGCuuCG- -5'
26653 3' -56.4 NC_005808.1 + 35269 0.66 0.553584
Target:  5'- -gCGGCGAcCU-UCCACcaGCuuGAAGCc -3'
miRNA:   3'- aaGCCGCUuGAcAGGUG--CGggCUUCG- -5'
26653 3' -56.4 NC_005808.1 + 37055 0.66 0.553584
Target:  5'- cUCGGCGGGgUGcguUUCGCGCgUGgcGCg -3'
miRNA:   3'- aAGCCGCUUgAC---AGGUGCGgGCuuCG- -5'
26653 3' -56.4 NC_005808.1 + 30393 0.66 0.550307
Target:  5'- gUCGGUGAuaACggcGUCCACGCUuucgcucggcauggCGAugAGCg -3'
miRNA:   3'- aAGCCGCU--UGa--CAGGUGCGG--------------GCU--UCG- -5'
26653 3' -56.4 NC_005808.1 + 9665 0.66 0.542684
Target:  5'- -aCGuCGAACU---CACGCCCGAGGUg -3'
miRNA:   3'- aaGCcGCUUGAcagGUGCGGGCUUCG- -5'
26653 3' -56.4 NC_005808.1 + 28379 0.66 0.541598
Target:  5'- cUUGGCGAGgUGUUCcaguucgACGCCgGcGGCg -3'
miRNA:   3'- aAGCCGCUUgACAGG-------UGCGGgCuUCG- -5'
26653 3' -56.4 NC_005808.1 + 15723 0.66 0.541597
Target:  5'- cUCGGgGAGCcGguaagCCAUaucagcgGCCUGGAGCa -3'
miRNA:   3'- aAGCCgCUUGaCa----GGUG-------CGGGCUUCG- -5'
26653 3' -56.4 NC_005808.1 + 27847 0.67 0.536178
Target:  5'- -cCGGCcgcgccgcugcucaaGAACgUGUCCGCGCUCGccaucuuGGCg -3'
miRNA:   3'- aaGCCG---------------CUUG-ACAGGUGCGGGCu------UCG- -5'
26653 3' -56.4 NC_005808.1 + 13647 0.67 0.531855
Target:  5'- -cCGGCGcGGCcGUCCAUGUCCuuGGUg -3'
miRNA:   3'- aaGCCGC-UUGaCAGGUGCGGGcuUCG- -5'
26653 3' -56.4 NC_005808.1 + 30614 0.67 0.531855
Target:  5'- aUCGGCGAuCUGUUCuuGCgaccagCCGgcGCg -3'
miRNA:   3'- aAGCCGCUuGACAGGugCG------GGCuuCG- -5'
26653 3' -56.4 NC_005808.1 + 28203 0.67 0.510441
Target:  5'- -cCGGCaAGCUG-CUGcCGCCCGAccaGGCg -3'
miRNA:   3'- aaGCCGcUUGACaGGU-GCGGGCU---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.