miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26653 5' -54.3 NC_005808.1 + 739 0.66 0.686181
Target:  5'- gGCGCCGCCGuaGGCgGCCuggUgGCu-- -3'
miRNA:   3'- -CGCGGCGGCuaUCG-CGGua-AgUGuua -5'
26653 5' -54.3 NC_005808.1 + 2153 0.66 0.686181
Target:  5'- cGCGCCGCCGuacacguUGGCGaacagUUGCGAg -3'
miRNA:   3'- -CGCGGCGGCu------AUCGCggua-AGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 28606 0.66 0.686181
Target:  5'- gGCgGCCGCaaGGUcGUGCCGUUCaACAAg -3'
miRNA:   3'- -CG-CGGCGg-CUAuCGCGGUAAG-UGUUa -5'
26653 5' -54.3 NC_005808.1 + 23826 0.66 0.686181
Target:  5'- gGCGCaucgGcCCGGUGGCGCCGgcauggCGCu-- -3'
miRNA:   3'- -CGCGg---C-GGCUAUCGCGGUaa----GUGuua -5'
26653 5' -54.3 NC_005808.1 + 17466 0.66 0.683923
Target:  5'- gGCGCCGCUGAaucgaagcgguGCGUCgg-CGCGAUg -3'
miRNA:   3'- -CGCGGCGGCUau---------CGCGGuaaGUGUUA- -5'
26653 5' -54.3 NC_005808.1 + 17205 0.66 0.67487
Target:  5'- cCGCCGCCGAaggAGCGUugCAggaCGCGGa -3'
miRNA:   3'- cGCGGCGGCUa--UCGCG--GUaa-GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 39031 0.66 0.67487
Target:  5'- cGCGUCGCUGAaauuuaugcGGCGCgGUUgGCGGg -3'
miRNA:   3'- -CGCGGCGGCUa--------UCGCGgUAAgUGUUa -5'
26653 5' -54.3 NC_005808.1 + 461 0.66 0.663516
Target:  5'- cGUGCUGCUGGUGGgCGCCcUggGCAu- -3'
miRNA:   3'- -CGCGGCGGCUAUC-GCGGuAagUGUua -5'
26653 5' -54.3 NC_005808.1 + 16070 0.66 0.663516
Target:  5'- -gGCCGCCGcgcgcGGCGCCGUagAUggUc -3'
miRNA:   3'- cgCGGCGGCua---UCGCGGUAagUGuuA- -5'
26653 5' -54.3 NC_005808.1 + 34044 0.66 0.663516
Target:  5'- gGCGUgGCCGGUA-CGCCcUUCGgAAa -3'
miRNA:   3'- -CGCGgCGGCUAUcGCGGuAAGUgUUa -5'
26653 5' -54.3 NC_005808.1 + 35038 0.66 0.663516
Target:  5'- cGUGUCcaaGCCGGUGGCGCCGcagaucgagCACGc- -3'
miRNA:   3'- -CGCGG---CGGCUAUCGCGGUaa-------GUGUua -5'
26653 5' -54.3 NC_005808.1 + 15633 0.66 0.663516
Target:  5'- cGCGUCGUCacuGAcGGCGCCAUUgACc-- -3'
miRNA:   3'- -CGCGGCGG---CUaUCGCGGUAAgUGuua -5'
26653 5' -54.3 NC_005808.1 + 4016 0.66 0.65213
Target:  5'- cGCGCCgGCCaccAGCGUCAUgccgCGCGGg -3'
miRNA:   3'- -CGCGG-CGGcuaUCGCGGUAa---GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 27596 0.66 0.65213
Target:  5'- gGCGgCGCCaGAUGGCGUgGUcgUCGCc-- -3'
miRNA:   3'- -CGCgGCGG-CUAUCGCGgUA--AGUGuua -5'
26653 5' -54.3 NC_005808.1 + 33671 0.66 0.640724
Target:  5'- cGUGCCGCCagcGGUGGCcguGCCGgaUUCGCc-- -3'
miRNA:   3'- -CGCGGCGG---CUAUCG---CGGU--AAGUGuua -5'
26653 5' -54.3 NC_005808.1 + 27646 0.66 0.640724
Target:  5'- gGCGCCGCCugcugccGGUGCCcUUUACGc- -3'
miRNA:   3'- -CGCGGCGGcua----UCGCGGuAAGUGUua -5'
26653 5' -54.3 NC_005808.1 + 39098 0.66 0.640724
Target:  5'- cGCGCCGCauaaauuucagCGAc-GCGCCGggUCACGu- -3'
miRNA:   3'- -CGCGGCG-----------GCUauCGCGGUa-AGUGUua -5'
26653 5' -54.3 NC_005808.1 + 15767 0.66 0.640724
Target:  5'- uUGCCGCCaAUGGUGCgAcgCACGAc -3'
miRNA:   3'- cGCGGCGGcUAUCGCGgUaaGUGUUa -5'
26653 5' -54.3 NC_005808.1 + 23764 0.66 0.640724
Target:  5'- gGCGCCaccggGCCGAU-GCGCCGcggcUACGAa -3'
miRNA:   3'- -CGCGG-----CGGCUAuCGCGGUaa--GUGUUa -5'
26653 5' -54.3 NC_005808.1 + 27063 0.66 0.640724
Target:  5'- cGCGCCGCUG-UAGCcCCAguucUUGCAGc -3'
miRNA:   3'- -CGCGGCGGCuAUCGcGGUa---AGUGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.