miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 42262 0.67 0.259054
Target:  5'- aGCGCgCGACUGuuGAGCagCACGUcgcGGGCCa -3'
miRNA:   3'- -CGCG-GCUGGC--UUCG--GUGCGu--CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 42167 0.68 0.246349
Target:  5'- cGCGCUGAac-AAGuCCACGUuGGGCCa -3'
miRNA:   3'- -CGCGGCUggcUUC-GGUGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 41814 0.67 0.27842
Target:  5'- -aGCCGACCGuGGCCuguauggcuuuCGUuucccuaucgacgAGGGCCg -3'
miRNA:   3'- cgCGGCUGGCuUCGGu----------GCG-------------UCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 40901 0.7 0.171346
Target:  5'- -gGCCGGCCugcGCCugGCGcgucGGGCCg -3'
miRNA:   3'- cgCGGCUGGcuuCGGugCGU----CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 40701 0.66 0.300379
Target:  5'- aGCGCgCGGCCcuggggGAAGgCACGCuguaGGCCg -3'
miRNA:   3'- -CGCG-GCUGG------CUUCgGUGCGuc--CCGGa -5'
26658 3' -61.9 NC_005808.1 + 39902 0.67 0.277049
Target:  5'- cGUGCCGACCacuGCCgacaccucgacguuGCGCAGGuGCg- -3'
miRNA:   3'- -CGCGGCUGGcuuCGG--------------UGCGUCC-CGga -5'
26658 3' -61.9 NC_005808.1 + 37989 0.66 0.315242
Target:  5'- cCGCCGacaucaucGCCGAGGCCGaGCAGuuccucGCCUg -3'
miRNA:   3'- cGCGGC--------UGGCUUCGGUgCGUCc-----CGGA- -5'
26658 3' -61.9 NC_005808.1 + 37538 0.7 0.158184
Target:  5'- gGCGCCGuugaACUGcaacguGCCGCGCAGGcgGCCg -3'
miRNA:   3'- -CGCGGC----UGGCuu----CGGUGCGUCC--CGGa -5'
26658 3' -61.9 NC_005808.1 + 37491 0.67 0.293152
Target:  5'- gGCGCCaGCCGca-CCggACGCuGGGCCg -3'
miRNA:   3'- -CGCGGcUGGCuucGG--UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 36911 0.66 0.300379
Target:  5'- cGCGCCGGgCagcGAGUgCGC-CAGGGCCUu -3'
miRNA:   3'- -CGCGGCUgGc--UUCG-GUGcGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 36313 0.67 0.293153
Target:  5'- aGCGcCCGGcCCGAAgGCCgggGCGCuGGGUUa -3'
miRNA:   3'- -CGC-GGCU-GGCUU-CGG---UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 36115 0.69 0.205911
Target:  5'- gGCGuuGACguaGcAGcCCGCGUAGGGCUUg -3'
miRNA:   3'- -CGCggCUGg--CuUC-GGUGCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 35822 0.67 0.293152
Target:  5'- gGCGCUGaACC-AGGCCAUcgaGCAGGucGCCa -3'
miRNA:   3'- -CGCGGC-UGGcUUCGGUG---CGUCC--CGGa -5'
26658 3' -61.9 NC_005808.1 + 35546 0.7 0.175946
Target:  5'- cGCuGCCGcCCGAGGCCAUGC---GCCUg -3'
miRNA:   3'- -CG-CGGCuGGCUUCGGUGCGuccCGGA- -5'
26658 3' -61.9 NC_005808.1 + 35520 0.71 0.142058
Target:  5'- uCGUCGGCUGcGGCCugGaugacCAGGGCCg -3'
miRNA:   3'- cGCGGCUGGCuUCGGugC-----GUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 35367 0.74 0.084235
Target:  5'- cGCGCCaguGGCCGAAGU--UGCAGGGCUUc -3'
miRNA:   3'- -CGCGG---CUGGCUUCGguGCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 35250 0.76 0.06011
Target:  5'- aCGCCGAggUCGAGGCCGCGCucaaGGCCa -3'
miRNA:   3'- cGCGGCU--GGCUUCGGUGCGuc--CCGGa -5'
26658 3' -61.9 NC_005808.1 + 35156 0.69 0.185477
Target:  5'- cGCGCgaaGGCCGAAGCCGaacUGCu-GGCCg -3'
miRNA:   3'- -CGCGg--CUGGCUUCGGU---GCGucCCGGa -5'
26658 3' -61.9 NC_005808.1 + 34369 0.67 0.27229
Target:  5'- uCGCCGACgaGGgcacGGCCGCGCAcgaacuGGCCg -3'
miRNA:   3'- cGCGGCUGg-CU----UCGGUGCGUc-----CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33721 0.67 0.279109
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.