miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26660 3' -62.8 NC_005808.1 + 10932 0.78 0.033985
Target:  5'- gGUUUGCAGGGCCUCGgGCaguuGCGCGg -3'
miRNA:   3'- gCGAGCGUCCCGGAGUgCGgu--CGCGU- -5'
26660 3' -62.8 NC_005808.1 + 18049 0.68 0.206847
Target:  5'- uGCUUG-GGGGCCUUA--CCGGCGCGg -3'
miRNA:   3'- gCGAGCgUCCCGGAGUgcGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 12549 0.67 0.21785
Target:  5'- gGCgUCGguGaauuucuugccGGCCUCGCGCU-GCGCGg -3'
miRNA:   3'- gCG-AGCguC-----------CCGGAGUGCGGuCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 31722 0.67 0.21785
Target:  5'- cCGCcgCGCGcGGGCUuuuUCACGCCuaaaaauauGCGCu -3'
miRNA:   3'- -GCGa-GCGU-CCCGG---AGUGCGGu--------CGCGu -5'
26660 3' -62.8 NC_005808.1 + 6730 0.67 0.223538
Target:  5'- cCGCUgCGCuGGGCCgcCGCGCUcaauAGCGgAa -3'
miRNA:   3'- -GCGA-GCGuCCCGGa-GUGCGG----UCGCgU- -5'
26660 3' -62.8 NC_005808.1 + 28648 0.67 0.246932
Target:  5'- cCGCgCGCAGuGCCagaUCGgugccggcggccuCGCCAGCGCGg -3'
miRNA:   3'- -GCGaGCGUCcCGG---AGU-------------GCGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 16057 0.66 0.253888
Target:  5'- aGUUCGCGcacGuGGCCgcCGCGCgCGGCGCc -3'
miRNA:   3'- gCGAGCGU---C-CCGGa-GUGCG-GUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 34138 0.66 0.280541
Target:  5'- gGCaUCGCAGGccaCCUCgACGCCGacaucGCGCc -3'
miRNA:   3'- gCG-AGCGUCCc--GGAG-UGCGGU-----CGCGu -5'
26660 3' -62.8 NC_005808.1 + 16425 0.66 0.280541
Target:  5'- gGC-CGCGGGGUaau-CGCCGGCgGCGu -3'
miRNA:   3'- gCGaGCGUCCCGgaguGCGGUCG-CGU- -5'
26660 3' -62.8 NC_005808.1 + 25926 0.68 0.196327
Target:  5'- aGCUUGCGGuGGCCcagCAUGuCCcGCGCu -3'
miRNA:   3'- gCGAGCGUC-CCGGa--GUGC-GGuCGCGu -5'
26660 3' -62.8 NC_005808.1 + 26728 0.68 0.191245
Target:  5'- uGCaaaGCcGGGCCaC-CGCCAGCGCGc -3'
miRNA:   3'- gCGag-CGuCCCGGaGuGCGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 8376 0.72 0.09441
Target:  5'- gGCUCGaacccGGCCUCGCGCUGGCuGCGu -3'
miRNA:   3'- gCGAGCguc--CCGGAGUGCGGUCG-CGU- -5'
26660 3' -62.8 NC_005808.1 + 30437 0.72 0.097074
Target:  5'- gCGCggGCAGGGCCUCGCccugaaucaguuGCCagggGGCGCc -3'
miRNA:   3'- -GCGagCGUCCCGGAGUG------------CGG----UCGCGu -5'
26660 3' -62.8 NC_005808.1 + 37288 0.71 0.127886
Target:  5'- uGCUCGCGGccuacGGCCUCGaccUGCCAGacauGCAg -3'
miRNA:   3'- gCGAGCGUC-----CCGGAGU---GCGGUCg---CGU- -5'
26660 3' -62.8 NC_005808.1 + 27445 0.69 0.154603
Target:  5'- gGC-CGCAGGcCCUggcgcuggUAUGCCAGCGCGc -3'
miRNA:   3'- gCGaGCGUCCcGGA--------GUGCGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 31660 0.69 0.167533
Target:  5'- cCGCUUGguGGGCCUaCACcgGCCAcaaGCAc -3'
miRNA:   3'- -GCGAGCguCCCGGA-GUG--CGGUcg-CGU- -5'
26660 3' -62.8 NC_005808.1 + 3715 0.69 0.172055
Target:  5'- gCGCUCGUGGcGCCcgugccguUCACGCCGGUGg- -3'
miRNA:   3'- -GCGAGCGUCcCGG--------AGUGCGGUCGCgu -5'
26660 3' -62.8 NC_005808.1 + 6231 0.68 0.191245
Target:  5'- uGCcuUCGgcCAGGGCCUgCACGCCgguaacGGUGCGg -3'
miRNA:   3'- gCG--AGC--GUCCCGGA-GUGCGG------UCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 18075 0.68 0.191245
Target:  5'- uGCgUGCuGGGCCgccgaaGCCGGCGCGa -3'
miRNA:   3'- gCGaGCGuCCCGGagug--CGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 32736 0.66 0.287542
Target:  5'- uGCUC---GGGCUUCACGUCGG-GCAg -3'
miRNA:   3'- gCGAGcguCCCGGAGUGCGGUCgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.