miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26665 5' -56 NC_005808.1 + 13115 1.08 0.000654
Target:  5'- gCAGACGGCCGCACUCAAGCAACGCGAu -3'
miRNA:   3'- -GUCUGCCGGCGUGAGUUCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 29580 0.8 0.084321
Target:  5'- uCAGGuCGGCCGCGCcCAGGC-GCGCGGu -3'
miRNA:   3'- -GUCU-GCCGGCGUGaGUUCGuUGCGCU- -5'
26665 5' -56 NC_005808.1 + 16806 0.75 0.1672
Target:  5'- cCAGuuGGUCGCGCcCAGGCGGCGCa- -3'
miRNA:   3'- -GUCugCCGGCGUGaGUUCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 38891 0.75 0.176715
Target:  5'- gCGGAUGcGCCGCAUg-GGGCAGCGCGu -3'
miRNA:   3'- -GUCUGC-CGGCGUGagUUCGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 9429 0.75 0.18165
Target:  5'- gCAcGCGGCCGCAUcaUCAAGCAACuGCa- -3'
miRNA:   3'- -GUcUGCCGGCGUG--AGUUCGUUG-CGcu -5'
26665 5' -56 NC_005808.1 + 35876 0.74 0.208194
Target:  5'- -cGAC-GCCGUGCUCAAGCAgauGCGCGc -3'
miRNA:   3'- guCUGcCGGCGUGAGUUCGU---UGCGCu -5'
26665 5' -56 NC_005808.1 + 25360 0.73 0.219129
Target:  5'- aGGGcCGGCCGCACgaccucaaggcauUCGacgaagugaccgAGCAGCGCGAg -3'
miRNA:   3'- gUCU-GCCGGCGUG-------------AGU------------UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 27900 0.73 0.219718
Target:  5'- gCGGcGCGGCCgGCGCcaccgCGGGCAGCGCGc -3'
miRNA:   3'- -GUC-UGCCGG-CGUGa----GUUCGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 3492 0.72 0.264387
Target:  5'- -cGACGGcCCGCugUacCAGuacGCAGCGCGAg -3'
miRNA:   3'- guCUGCC-GGCGugA--GUU---CGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 39867 0.72 0.285682
Target:  5'- gCAGcGCcgGGCCGCGCUCAAGCGuccggccaACGUGu -3'
miRNA:   3'- -GUC-UG--CCGGCGUGAGUUCGU--------UGCGCu -5'
26665 5' -56 NC_005808.1 + 28607 0.71 0.293075
Target:  5'- -cGGCGGCCGCAaggucgugccgUUCAacaAGCAGCGCc- -3'
miRNA:   3'- guCUGCCGGCGU-----------GAGU---UCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 38194 0.71 0.300616
Target:  5'- -cGACuGCCGCacGCUCAAGgccCGGCGCGAc -3'
miRNA:   3'- guCUGcCGGCG--UGAGUUC---GUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 25783 0.71 0.308307
Target:  5'- -cGAUGGCCGCGaugCGcGCGGCGCGc -3'
miRNA:   3'- guCUGCCGGCGUga-GUuCGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 12078 0.71 0.308307
Target:  5'- cCGGccACGGCCGCGCUgCuGGCcGACGUGGa -3'
miRNA:   3'- -GUC--UGCCGGCGUGA-GuUCG-UUGCGCU- -5'
26665 5' -56 NC_005808.1 + 32171 0.71 0.316146
Target:  5'- gCAG-CGGCCaGgGCgUUGAGCAACGCGGc -3'
miRNA:   3'- -GUCuGCCGG-CgUG-AGUUCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 37546 0.71 0.316147
Target:  5'- --cGCGGCCuGUGCUCAAGCAggACGCc- -3'
miRNA:   3'- gucUGCCGG-CGUGAGUUCGU--UGCGcu -5'
26665 5' -56 NC_005808.1 + 21251 0.71 0.324136
Target:  5'- gCAGACcagcagcaGGCCGCGCagCAGGCcGCGCu- -3'
miRNA:   3'- -GUCUG--------CCGGCGUGa-GUUCGuUGCGcu -5'
26665 5' -56 NC_005808.1 + 16473 0.71 0.324136
Target:  5'- --cGCGGCCGUguccuACuUCGAGCAACGcCGAu -3'
miRNA:   3'- gucUGCCGGCG-----UG-AGUUCGUUGC-GCU- -5'
26665 5' -56 NC_005808.1 + 6591 0.71 0.332274
Target:  5'- cCAGcACGGCCgGCACcacguaGAGCAugGCGu -3'
miRNA:   3'- -GUC-UGCCGG-CGUGag----UUCGUugCGCu -5'
26665 5' -56 NC_005808.1 + 24168 0.71 0.332274
Target:  5'- -cGACGGCugCGCGCUUcGGCGuguccaugaGCGCGAg -3'
miRNA:   3'- guCUGCCG--GCGUGAGuUCGU---------UGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.