miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26665 5' -56 NC_005808.1 + 37512 0.7 0.348998
Target:  5'- gCAGGCGGCCGUcgcuGCUCAcGCccuugGCGAg -3'
miRNA:   3'- -GUCUGCCGGCG----UGAGUuCGuug--CGCU- -5'
26665 5' -56 NC_005808.1 + 35255 0.7 0.357582
Target:  5'- gAGGucgaGGCCGCGCUCAAgGCcAUGCGu -3'
miRNA:   3'- gUCUg---CCGGCGUGAGUU-CGuUGCGCu -5'
26665 5' -56 NC_005808.1 + 25145 0.7 0.357582
Target:  5'- cCGGGCGcGCUGCGCUgGguGGCGAUGCu- -3'
miRNA:   3'- -GUCUGC-CGGCGUGAgU--UCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 2937 0.7 0.384211
Target:  5'- -cGACGGcCCGUugUucCAGuucGCAGCGCGAg -3'
miRNA:   3'- guCUGCC-GGCGugA--GUU---CGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 24285 0.69 0.401743
Target:  5'- aAGAuCGGCCGCucgccggACUUuGGCAGCGCc- -3'
miRNA:   3'- gUCU-GCCGGCG-------UGAGuUCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 25620 0.69 0.40268
Target:  5'- -cGGCGG-CGCGgUCGccAGCAGCGCGu -3'
miRNA:   3'- guCUGCCgGCGUgAGU--UCGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 34833 0.69 0.40268
Target:  5'- aGGcGCGGCUGCACgaugacCAGGCGcACGCGc -3'
miRNA:   3'- gUC-UGCCGGCGUGa-----GUUCGU-UGCGCu -5'
26665 5' -56 NC_005808.1 + 16748 0.69 0.409275
Target:  5'- -uGGCGGUCaCGCUCGugggcguagccaccGGCGACGUGAa -3'
miRNA:   3'- guCUGCCGGcGUGAGU--------------UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 15439 0.69 0.412122
Target:  5'- gCAcGCGGaCGCGCUCAccgaggugaAGCAGCGCa- -3'
miRNA:   3'- -GUcUGCCgGCGUGAGU---------UCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 20758 0.69 0.412123
Target:  5'- gAGGCGcugcGCCGCGCUCGAcuCAucGCGCGGc -3'
miRNA:   3'- gUCUGC----CGGCGUGAGUUc-GU--UGCGCU- -5'
26665 5' -56 NC_005808.1 + 34114 0.69 0.420737
Target:  5'- -cGACaGCCGCGCcgauggCGGGCAgcgacagGCGCGAc -3'
miRNA:   3'- guCUGcCGGCGUGa-----GUUCGU-------UGCGCU- -5'
26665 5' -56 NC_005808.1 + 23364 0.69 0.421701
Target:  5'- cCAGugcCGGCCGCAaaCAGGCAuuCGUGGc -3'
miRNA:   3'- -GUCu--GCCGGCGUgaGUUCGUu-GCGCU- -5'
26665 5' -56 NC_005808.1 + 16332 0.69 0.421701
Target:  5'- cCGGGUGGCCGCGCgCGAGgcCAACGCc- -3'
miRNA:   3'- -GUCUGCCGGCGUGaGUUC--GUUGCGcu -5'
26665 5' -56 NC_005808.1 + 8286 0.69 0.431413
Target:  5'- -uGACGGCCGC---CGAcCAGCGCGAc -3'
miRNA:   3'- guCUGCCGGCGugaGUUcGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 30042 0.69 0.431413
Target:  5'- -cGACGGCUGCAUcCAGGCcgucgugcgcCGCGAc -3'
miRNA:   3'- guCUGCCGGCGUGaGUUCGuu--------GCGCU- -5'
26665 5' -56 NC_005808.1 + 35048 0.69 0.431413
Target:  5'- cCGGugGcGCCGCAgaUCGAGCAcgccgccgaGCGCa- -3'
miRNA:   3'- -GUCugC-CGGCGUg-AGUUCGU---------UGCGcu -5'
26665 5' -56 NC_005808.1 + 24011 0.69 0.431413
Target:  5'- aGGugGGCgCGUcggccaAUUCAgcgaaGGCGACGCGAc -3'
miRNA:   3'- gUCugCCG-GCG------UGAGU-----UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 32434 0.68 0.441254
Target:  5'- uGGGCGGCCGgGgcCUCGgcGGCGACcgcaGCGAc -3'
miRNA:   3'- gUCUGCCGGCgU--GAGU--UCGUUG----CGCU- -5'
26665 5' -56 NC_005808.1 + 5233 0.68 0.441254
Target:  5'- gCAGGCGGUgGCA----GGCAAUGCGGc -3'
miRNA:   3'- -GUCUGCCGgCGUgaguUCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 4102 0.68 0.451221
Target:  5'- ---cCGGCUGCGCUCGAcCcGCGCGGc -3'
miRNA:   3'- gucuGCCGGCGUGAGUUcGuUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.