miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26665 5' -56 NC_005808.1 + 38488 0.67 0.502797
Target:  5'- gUAGcCGGCCGC-CUCGauGGCGGgcauguuggcCGCGAg -3'
miRNA:   3'- -GUCuGCCGGCGuGAGU--UCGUU----------GCGCU- -5'
26665 5' -56 NC_005808.1 + 11833 0.68 0.481838
Target:  5'- aCAGAcCGGCCGCGCcgCGguuGGCcuGgGCGAa -3'
miRNA:   3'- -GUCU-GCCGGCGUGa-GU---UCGu-UgCGCU- -5'
26665 5' -56 NC_005808.1 + 13600 0.68 0.481838
Target:  5'- uCAGGCGGCCGaCAgUU---CGGCGCGGa -3'
miRNA:   3'- -GUCUGCCGGC-GUgAGuucGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 27485 0.68 0.471517
Target:  5'- cCGGGCGcGgUGCGC-CAGGCG-CGCGAc -3'
miRNA:   3'- -GUCUGC-CgGCGUGaGUUCGUuGCGCU- -5'
26665 5' -56 NC_005808.1 + 22253 0.68 0.471517
Target:  5'- cCAGAucaCGGUCGCGCagAuGguGCGCGAa -3'
miRNA:   3'- -GUCU---GCCGGCGUGagUuCguUGCGCU- -5'
26665 5' -56 NC_005808.1 + 28874 0.68 0.468443
Target:  5'- -cGACGGCgCGCuggcuGCUCAagaucggcaaccagGGCaAGCGCGAc -3'
miRNA:   3'- guCUGCCG-GCG-----UGAGU--------------UCG-UUGCGCU- -5'
26665 5' -56 NC_005808.1 + 41850 0.68 0.46131
Target:  5'- gCAGGUGGCUGgGCUUGAGC-GCGCGc -3'
miRNA:   3'- -GUCUGCCGGCgUGAGUUCGuUGCGCu -5'
26665 5' -56 NC_005808.1 + 36516 0.68 0.46131
Target:  5'- ----aGGCCGCGCUCGacgacuucgaGGCggUGUGAu -3'
miRNA:   3'- gucugCCGGCGUGAGU----------UCGuuGCGCU- -5'
26665 5' -56 NC_005808.1 + 28672 0.68 0.46131
Target:  5'- -cGGCGGCCuCGC-CAGcGCGGCGCGc -3'
miRNA:   3'- guCUGCCGGcGUGaGUU-CGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 28571 0.68 0.46131
Target:  5'- --cGCGGCgCGCACgUCGgccaccGGCAGCGUGGu -3'
miRNA:   3'- gucUGCCG-GCGUG-AGU------UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 4102 0.68 0.451221
Target:  5'- ---cCGGCUGCGCUCGAcCcGCGCGGc -3'
miRNA:   3'- gucuGCCGGCGUGAGUUcGuUGCGCU- -5'
26665 5' -56 NC_005808.1 + 28339 0.68 0.451221
Target:  5'- -cGAUGGCCuugGC-CUCGucgGGCAGCGCGc -3'
miRNA:   3'- guCUGCCGG---CGuGAGU---UCGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 5233 0.68 0.441254
Target:  5'- gCAGGCGGUgGCA----GGCAAUGCGGc -3'
miRNA:   3'- -GUCUGCCGgCGUgaguUCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 32434 0.68 0.441254
Target:  5'- uGGGCGGCCGgGgcCUCGgcGGCGACcgcaGCGAc -3'
miRNA:   3'- gUCUGCCGGCgU--GAGU--UCGUUG----CGCU- -5'
26665 5' -56 NC_005808.1 + 8286 0.69 0.431413
Target:  5'- -uGACGGCCGC---CGAcCAGCGCGAc -3'
miRNA:   3'- guCUGCCGGCGugaGUUcGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 30042 0.69 0.431413
Target:  5'- -cGACGGCUGCAUcCAGGCcgucgugcgcCGCGAc -3'
miRNA:   3'- guCUGCCGGCGUGaGUUCGuu--------GCGCU- -5'
26665 5' -56 NC_005808.1 + 24011 0.69 0.431413
Target:  5'- aGGugGGCgCGUcggccaAUUCAgcgaaGGCGACGCGAc -3'
miRNA:   3'- gUCugCCG-GCG------UGAGU-----UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 35048 0.69 0.431413
Target:  5'- cCGGugGcGCCGCAgaUCGAGCAcgccgccgaGCGCa- -3'
miRNA:   3'- -GUCugC-CGGCGUg-AGUUCGU---------UGCGcu -5'
26665 5' -56 NC_005808.1 + 16332 0.69 0.421701
Target:  5'- cCGGGUGGCCGCGCgCGAGgcCAACGCc- -3'
miRNA:   3'- -GUCUGCCGGCGUGaGUUC--GUUGCGcu -5'
26665 5' -56 NC_005808.1 + 23364 0.69 0.421701
Target:  5'- cCAGugcCGGCCGCAaaCAGGCAuuCGUGGc -3'
miRNA:   3'- -GUCu--GCCGGCGUgaGUUCGUu-GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.