miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26665 5' -56 NC_005808.1 + 36516 0.68 0.46131
Target:  5'- ----aGGCCGCGCUCGacgacuucgaGGCggUGUGAu -3'
miRNA:   3'- gucugCCGGCGUGAGU----------UCGuuGCGCU- -5'
26665 5' -56 NC_005808.1 + 2937 0.7 0.384211
Target:  5'- -cGACGGcCCGUugUucCAGuucGCAGCGCGAg -3'
miRNA:   3'- guCUGCC-GGCGugA--GUU---CGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 25620 0.69 0.40268
Target:  5'- -cGGCGG-CGCGgUCGccAGCAGCGCGu -3'
miRNA:   3'- guCUGCCgGCGUgAGU--UCGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 16748 0.69 0.409275
Target:  5'- -uGGCGGUCaCGCUCGugggcguagccaccGGCGACGUGAa -3'
miRNA:   3'- guCUGCCGGcGUGAGU--------------UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 20758 0.69 0.412123
Target:  5'- gAGGCGcugcGCCGCGCUCGAcuCAucGCGCGGc -3'
miRNA:   3'- gUCUGC----CGGCGUGAGUUc-GU--UGCGCU- -5'
26665 5' -56 NC_005808.1 + 24011 0.69 0.431413
Target:  5'- aGGugGGCgCGUcggccaAUUCAgcgaaGGCGACGCGAc -3'
miRNA:   3'- gUCugCCG-GCG------UGAGU-----UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 35048 0.69 0.431413
Target:  5'- cCGGugGcGCCGCAgaUCGAGCAcgccgccgaGCGCa- -3'
miRNA:   3'- -GUCugC-CGGCGUg-AGUUCGU---------UGCGcu -5'
26665 5' -56 NC_005808.1 + 28339 0.68 0.451221
Target:  5'- -cGAUGGCCuugGC-CUCGucgGGCAGCGCGc -3'
miRNA:   3'- guCUGCCGG---CGuGAGU---UCGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 28672 0.68 0.46131
Target:  5'- -cGGCGGCCuCGC-CAGcGCGGCGCGc -3'
miRNA:   3'- guCUGCCGGcGUGaGUU-CGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 35255 0.7 0.357582
Target:  5'- gAGGucgaGGCCGCGCUCAAgGCcAUGCGu -3'
miRNA:   3'- gUCUg---CCGGCGUGAGUU-CGuUGCGCu -5'
26665 5' -56 NC_005808.1 + 24168 0.71 0.332274
Target:  5'- -cGACGGCugCGCGCUUcGGCGuguccaugaGCGCGAg -3'
miRNA:   3'- guCUGCCG--GCGUGAGuUCGU---------UGCGCU- -5'
26665 5' -56 NC_005808.1 + 6591 0.71 0.332274
Target:  5'- cCAGcACGGCCgGCACcacguaGAGCAugGCGu -3'
miRNA:   3'- -GUC-UGCCGG-CGUGag----UUCGUugCGCu -5'
26665 5' -56 NC_005808.1 + 16806 0.75 0.1672
Target:  5'- cCAGuuGGUCGCGCcCAGGCGGCGCa- -3'
miRNA:   3'- -GUCugCCGGCGUGaGUUCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 38891 0.75 0.176715
Target:  5'- gCGGAUGcGCCGCAUg-GGGCAGCGCGu -3'
miRNA:   3'- -GUCUGC-CGGCGUGagUUCGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 35876 0.74 0.208194
Target:  5'- -cGAC-GCCGUGCUCAAGCAgauGCGCGc -3'
miRNA:   3'- guCUGcCGGCGUGAGUUCGU---UGCGCu -5'
26665 5' -56 NC_005808.1 + 3492 0.72 0.264387
Target:  5'- -cGACGGcCCGCugUacCAGuacGCAGCGCGAg -3'
miRNA:   3'- guCUGCC-GGCGugA--GUU---CGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 39867 0.72 0.285682
Target:  5'- gCAGcGCcgGGCCGCGCUCAAGCGuccggccaACGUGu -3'
miRNA:   3'- -GUC-UG--CCGGCGUGAGUUCGU--------UGCGCu -5'
26665 5' -56 NC_005808.1 + 38194 0.71 0.300616
Target:  5'- -cGACuGCCGCacGCUCAAGgccCGGCGCGAc -3'
miRNA:   3'- guCUGcCGGCG--UGAGUUC---GUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 25783 0.71 0.308307
Target:  5'- -cGAUGGCCGCGaugCGcGCGGCGCGc -3'
miRNA:   3'- guCUGCCGGCGUga-GUuCGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 37546 0.71 0.316147
Target:  5'- --cGCGGCCuGUGCUCAAGCAggACGCc- -3'
miRNA:   3'- gucUGCCGG-CGUGAGUUCGU--UGCGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.