miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26665 5' -56 NC_005808.1 + 653 0.66 0.616778
Target:  5'- gCAGGCGGCCaucaaACUCAAGgAacuggaaaccaauucGCGCGu -3'
miRNA:   3'- -GUCUGCCGGcg---UGAGUUCgU---------------UGCGCu -5'
26665 5' -56 NC_005808.1 + 1357 0.66 0.55678
Target:  5'- -cGGCGGCCuuGCGCaUCcGGCGAC-CGAa -3'
miRNA:   3'- guCUGCCGG--CGUG-AGuUCGUUGcGCU- -5'
26665 5' -56 NC_005808.1 + 2937 0.7 0.384211
Target:  5'- -cGACGGcCCGUugUucCAGuucGCAGCGCGAg -3'
miRNA:   3'- guCUGCC-GGCGugA--GUU---CGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 3492 0.72 0.264387
Target:  5'- -cGACGGcCCGCugUacCAGuacGCAGCGCGAg -3'
miRNA:   3'- guCUGCC-GGCGugA--GUU---CGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 4102 0.68 0.451221
Target:  5'- ---cCGGCUGCGCUCGAcCcGCGCGGc -3'
miRNA:   3'- gucuGCCGGCGUGAGUUcGuUGCGCU- -5'
26665 5' -56 NC_005808.1 + 4438 0.66 0.589974
Target:  5'- aAGuCGGCCGuCGCcuUCAcgcgcaccGGCAACGCa- -3'
miRNA:   3'- gUCuGCCGGC-GUG--AGU--------UCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 5233 0.68 0.441254
Target:  5'- gCAGGCGGUgGCA----GGCAAUGCGGc -3'
miRNA:   3'- -GUCUGCCGgCGUgaguUCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 6591 0.71 0.332274
Target:  5'- cCAGcACGGCCgGCACcacguaGAGCAugGCGu -3'
miRNA:   3'- -GUC-UGCCGG-CGUGag----UUCGUugCGCu -5'
26665 5' -56 NC_005808.1 + 6739 0.66 0.589974
Target:  5'- uGGGCcGCCGCGCUCAA-UAGCG-GAa -3'
miRNA:   3'- gUCUGcCGGCGUGAGUUcGUUGCgCU- -5'
26665 5' -56 NC_005808.1 + 7307 0.66 0.589974
Target:  5'- uGGGCGGCCGaCAUcgcCGAGgGugaGCGCGGc -3'
miRNA:   3'- gUCUGCCGGC-GUGa--GUUCgU---UGCGCU- -5'
26665 5' -56 NC_005808.1 + 8286 0.69 0.431413
Target:  5'- -uGACGGCCGC---CGAcCAGCGCGAc -3'
miRNA:   3'- guCUGCCGGCGugaGUUcGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 8764 0.66 0.567794
Target:  5'- --cACGuGCCGC-UUCGGGCAgcACGCGGc -3'
miRNA:   3'- gucUGC-CGGCGuGAGUUCGU--UGCGCU- -5'
26665 5' -56 NC_005808.1 + 8833 0.66 0.601124
Target:  5'- uCGGGCcaGCCGCAacgCGGGCcAGCGCGu -3'
miRNA:   3'- -GUCUGc-CGGCGUga-GUUCG-UUGCGCu -5'
26665 5' -56 NC_005808.1 + 8914 0.66 0.601124
Target:  5'- -cGGCGG-CGCGCUCGauGGCuucgGGCGUGGa -3'
miRNA:   3'- guCUGCCgGCGUGAGU--UCG----UUGCGCU- -5'
26665 5' -56 NC_005808.1 + 9429 0.75 0.18165
Target:  5'- gCAcGCGGCCGCAUcaUCAAGCAACuGCa- -3'
miRNA:   3'- -GUcUGCCGGCGUG--AGUUCGUUG-CGcu -5'
26665 5' -56 NC_005808.1 + 11833 0.68 0.481838
Target:  5'- aCAGAcCGGCCGCGCcgCGguuGGCcuGgGCGAa -3'
miRNA:   3'- -GUCU-GCCGGCGUGa-GU---UCGu-UgCGCU- -5'
26665 5' -56 NC_005808.1 + 12078 0.71 0.308307
Target:  5'- cCGGccACGGCCGCGCUgCuGGCcGACGUGGa -3'
miRNA:   3'- -GUC--UGCCGGCGUGA-GuUCG-UUGCGCU- -5'
26665 5' -56 NC_005808.1 + 12472 0.67 0.545829
Target:  5'- aGGACggcaucaaGGCCGCAUaCAAGC-GCGCa- -3'
miRNA:   3'- gUCUG--------CCGGCGUGaGUUCGuUGCGcu -5'
26665 5' -56 NC_005808.1 + 13115 1.08 0.000654
Target:  5'- gCAGACGGCCGCACUCAAGCAACGCGAu -3'
miRNA:   3'- -GUCUGCCGGCGUGAGUUCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 13600 0.68 0.481838
Target:  5'- uCAGGCGGCCGaCAgUU---CGGCGCGGa -3'
miRNA:   3'- -GUCUGCCGGC-GUgAGuucGUUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.