miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26666 3' -65.6 NC_005808.1 + 8637 0.66 0.225643
Target:  5'- cACGCgCGGCCuacGaCGCCCaggaugaggucgAGCGCGGc -3'
miRNA:   3'- -UGCG-GCCGGuucCcGCGGG------------UCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 7254 0.66 0.225643
Target:  5'- cGCGCuguccCGGCUGcgucAGGGCG-UCAGCGCGu -3'
miRNA:   3'- -UGCG-----GCCGGU----UCCCGCgGGUCGCGCc -5'
26666 3' -65.6 NC_005808.1 + 40853 0.66 0.225643
Target:  5'- -gGCCGGCCAugacCGCCCGGUGUu- -3'
miRNA:   3'- ugCGGCCGGUucccGCGGGUCGCGcc -5'
26666 3' -65.6 NC_005808.1 + 14132 0.66 0.225643
Target:  5'- uCGUCGGCCAGcGGCuuGCcuuccggccguuCCAGCGCGu -3'
miRNA:   3'- uGCGGCCGGUUcCCG--CG------------GGUCGCGCc -5'
26666 3' -65.6 NC_005808.1 + 455 0.66 0.225643
Target:  5'- cUGCgCGGCCAGcuugcGGGCGCUgu-CGCGGu -3'
miRNA:   3'- uGCG-GCCGGUU-----CCCGCGGgucGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 37433 0.66 0.222281
Target:  5'- aACcCUcGCCAAGGGCGUgagcagcgacggccgCCuGCGCGGc -3'
miRNA:   3'- -UGcGGcCGGUUCCCGCG---------------GGuCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 17697 0.66 0.220064
Target:  5'- aGCGCCacucgGGCCGGGaaaUGCCCAuCGCGGc -3'
miRNA:   3'- -UGCGG-----CCGGUUCcc-GCGGGUcGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 28409 0.66 0.220064
Target:  5'- cGCGCUgcccgacgaGGCCAAGGccaucgaguccGaCGCCgAGCGCGc -3'
miRNA:   3'- -UGCGG---------CCGGUUCC-----------C-GCGGgUCGCGCc -5'
26666 3' -65.6 NC_005808.1 + 36733 0.66 0.218414
Target:  5'- cCGCUGGCggCAucccagacguacacGGGGCcauuGUCCAGCGCGu -3'
miRNA:   3'- uGCGGCCG--GU--------------UCCCG----CGGGUCGCGCc -5'
26666 3' -65.6 NC_005808.1 + 613 0.66 0.214604
Target:  5'- -gGUCGGCCAgcAGcgccguggacacGGCGUCCGGCGuCGa -3'
miRNA:   3'- ugCGGCCGGU--UC------------CCGCGGGUCGC-GCc -5'
26666 3' -65.6 NC_005808.1 + 8241 0.66 0.214604
Target:  5'- uCGCCGGCagcauccGGGCGCac-GCGCaGGg -3'
miRNA:   3'- uGCGGCCGguu----CCCGCGgguCGCG-CC- -5'
26666 3' -65.6 NC_005808.1 + 21748 0.66 0.212989
Target:  5'- gGCG-CGGCCGcguccacauaggacAGGcCGCCCGGCaCGGu -3'
miRNA:   3'- -UGCgGCCGGU--------------UCCcGCGGGUCGcGCC- -5'
26666 3' -65.6 NC_005808.1 + 28731 0.66 0.211384
Target:  5'- cGCGCUGG-CGAGGcCGCCgGcaccgaucuggcacuGCGCGGg -3'
miRNA:   3'- -UGCGGCCgGUUCCcGCGGgU---------------CGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 42053 0.66 0.209261
Target:  5'- cAUGUCGGCgAugauGGCcucaGCCuCGGCGCGGg -3'
miRNA:   3'- -UGCGGCCGgUuc--CCG----CGG-GUCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 35923 0.66 0.209261
Target:  5'- gGCGUCGGCCuu-GGCGCCCcacuuuuccuuGGCGa-- -3'
miRNA:   3'- -UGCGGCCGGuucCCGCGGG-----------UCGCgcc -5'
26666 3' -65.6 NC_005808.1 + 28636 0.66 0.209261
Target:  5'- -gGCCGGCCAguuccgcgcgcAGugccagaucGGUGCcggcggccucgCCAGCGCGGc -3'
miRNA:   3'- ugCGGCCGGU-----------UC---------CCGCG-----------GGUCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 27575 0.66 0.208733
Target:  5'- cGCGCCgagaagcuggcGGCCGAGGcCGCCgGcauccucGCGUGGu -3'
miRNA:   3'- -UGCGG-----------CCGGUUCCcGCGGgU-------CGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 27502 0.66 0.208733
Target:  5'- cCGgCGGCCucGGcCGCCagcuucuCGGCGCGGu -3'
miRNA:   3'- uGCgGCCGGuuCCcGCGG-------GUCGCGCC- -5'
26666 3' -65.6 NC_005808.1 + 7860 0.66 0.204032
Target:  5'- aGCGCCugcugggcGGCgAAGGGUGgacgCCGGCGCa- -3'
miRNA:   3'- -UGCGG--------CCGgUUCCCGCg---GGUCGCGcc -5'
26666 3' -65.6 NC_005808.1 + 24140 0.66 0.204032
Target:  5'- -aGCCGGCUgcGcGCcugGCCCAGCGCc- -3'
miRNA:   3'- ugCGGCCGGuuCcCG---CGGGUCGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.