miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26670 5' -55.5 NC_005808.1 + 29057 0.66 0.612887
Target:  5'- gGCGGCuCGuAGGCCAucaGCGGGU-CAu- -3'
miRNA:   3'- aCGUCGuGC-UCCGGU---CGCUCAuGUuc -5'
26670 5' -55.5 NC_005808.1 + 24980 0.66 0.590285
Target:  5'- aUGCGGCAaacauCGAGGCCGGUaucgACAAc -3'
miRNA:   3'- -ACGUCGU-----GCUCCGGUCGcucaUGUUc -5'
26670 5' -55.5 NC_005808.1 + 8117 0.66 0.57679
Target:  5'- cUGCAcCGCGcGGCCGGCGuugguugugggcGUGCGGGu -3'
miRNA:   3'- -ACGUcGUGCuCCGGUCGCu-----------CAUGUUC- -5'
26670 5' -55.5 NC_005808.1 + 26472 0.66 0.567832
Target:  5'- cGCAGUccuacguCGGGGCCAcCGAcGUGCAGc -3'
miRNA:   3'- aCGUCGu------GCUCCGGUcGCU-CAUGUUc -5'
26670 5' -55.5 NC_005808.1 + 12463 0.66 0.567832
Target:  5'- cGCGGUGC-AGGCCGGCGGcGUGu--- -3'
miRNA:   3'- aCGUCGUGcUCCGGUCGCU-CAUguuc -5'
26670 5' -55.5 NC_005808.1 + 12852 0.66 0.567832
Target:  5'- aGCAGC-CGAGGCCgaguucuacGGCGuGgcCGAu -3'
miRNA:   3'- aCGUCGuGCUCCGG---------UCGCuCauGUUc -5'
26670 5' -55.5 NC_005808.1 + 24304 0.66 0.567831
Target:  5'- gGCGGU--GAGGUCGGCGAGcagccGCGGGu -3'
miRNA:   3'- aCGUCGugCUCCGGUCGCUCa----UGUUC- -5'
26670 5' -55.5 NC_005808.1 + 39773 0.67 0.556684
Target:  5'- cGCuGCGCGuGGCC-GCGAGcACcuGg -3'
miRNA:   3'- aCGuCGUGCuCCGGuCGCUCaUGuuC- -5'
26670 5' -55.5 NC_005808.1 + 16310 0.67 0.556684
Target:  5'- cGC-GCACGGGa--AGCGAGUACGAc -3'
miRNA:   3'- aCGuCGUGCUCcggUCGCUCAUGUUc -5'
26670 5' -55.5 NC_005808.1 + 8843 0.67 0.556684
Target:  5'- cGCAaCGCG-GGCCAGCGcGUugGc- -3'
miRNA:   3'- aCGUcGUGCuCCGGUCGCuCAugUuc -5'
26670 5' -55.5 NC_005808.1 + 10232 0.67 0.534588
Target:  5'- gGCGGC-CGGGGCCucggcGGCGAccGCAGc -3'
miRNA:   3'- aCGUCGuGCUCCGG-----UCGCUcaUGUUc -5'
26670 5' -55.5 NC_005808.1 + 33936 0.67 0.523655
Target:  5'- aGCAGC-CGcuGCacaCAGCGAGUACGGc -3'
miRNA:   3'- aCGUCGuGCucCG---GUCGCUCAUGUUc -5'
26670 5' -55.5 NC_005808.1 + 38580 0.67 0.522567
Target:  5'- cGCGGCAUGAcgcugguGGCCGGCGcGUuuuGGg -3'
miRNA:   3'- aCGUCGUGCU-------CCGGUCGCuCAuguUC- -5'
26670 5' -55.5 NC_005808.1 + 14760 0.67 0.512809
Target:  5'- aGCAGCgGCGcGGCCGGCGccaccGCGGGc -3'
miRNA:   3'- aCGUCG-UGCuCCGGUCGCuca--UGUUC- -5'
26670 5' -55.5 NC_005808.1 + 32071 0.67 0.502057
Target:  5'- gGCGGCggaaaGCGuGGCCGGCG-GUcaGCAGu -3'
miRNA:   3'- aCGUCG-----UGCuCCGGUCGCuCA--UGUUc -5'
26670 5' -55.5 NC_005808.1 + 38491 0.68 0.480858
Target:  5'- cUGCAGCGC-AGGCUGGCGGaaACAc- -3'
miRNA:   3'- -ACGUCGUGcUCCGGUCGCUcaUGUuc -5'
26670 5' -55.5 NC_005808.1 + 9391 0.68 0.470422
Target:  5'- gUGCAGCcacugcaugucGCGcAGGCC-GCGGGcuUGCAGGu -3'
miRNA:   3'- -ACGUCG-----------UGC-UCCGGuCGCUC--AUGUUC- -5'
26670 5' -55.5 NC_005808.1 + 31797 0.68 0.470422
Target:  5'- aGCcGCGcCGAGGCgCAGC-AGUACAu- -3'
miRNA:   3'- aCGuCGU-GCUCCG-GUCGcUCAUGUuc -5'
26670 5' -55.5 NC_005808.1 + 11511 0.68 0.460103
Target:  5'- gGCAGCGCcugcgcuggcguGAGGCCcuGCGAGcggGCAu- -3'
miRNA:   3'- aCGUCGUG------------CUCCGGu-CGCUCa--UGUuc -5'
26670 5' -55.5 NC_005808.1 + 11418 0.68 0.449906
Target:  5'- aGCAGCgGCGA-GCCGGCG--UGCAGGu -3'
miRNA:   3'- aCGUCG-UGCUcCGGUCGCucAUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.