Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 34944 | 0.69 | 0.279352 |
Target: 5'- gGCGCGU-GUaCGGCAag-GA-GCCGGCg -3' miRNA: 3'- -CGCGCGuCA-GCCGUgaaCUcCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 14742 | 0.69 | 0.26365 |
Target: 5'- aGCGCggacacguucuugaGCAG-CGGCGC----GGCCGGCg -3' miRNA: 3'- -CGCG--------------CGUCaGCCGUGaacuCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 4504 | 0.72 | 0.184573 |
Target: 5'- uGCGCGCGGcgccacaGGCGCUUGAGcGCaucGCa -3' miRNA: 3'- -CGCGCGUCag-----CCGUGAACUC-CGgc-CG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 5241 | 0.75 | 0.109783 |
Target: 5'- uCGCGCAGUucggcCGGCAggUcGGGGUCGGCa -3' miRNA: 3'- cGCGCGUCA-----GCCGUgaA-CUCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 1876 | 0.66 | 0.399896 |
Target: 5'- aGCcCGUGGcCGGCGCUggccGGGUgGGCg -3' miRNA: 3'- -CGcGCGUCaGCCGUGAac--UCCGgCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 30036 | 0.68 | 0.331692 |
Target: 5'- cCGCGCA----GCGC--GAGGCCGGCa -3' miRNA: 3'- cGCGCGUcagcCGUGaaCUCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 5559 | 0.69 | 0.257703 |
Target: 5'- aCGCGCA--UGGCuucgaugucGAGGCCGGCa -3' miRNA: 3'- cGCGCGUcaGCCGugaa-----CUCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 244 | 0.75 | 0.106164 |
Target: 5'- aGgGCcgGCGGUagcgaauccccaGGCGCUUGAGGCaCGGCg -3' miRNA: 3'- -CgCG--CGUCAg-----------CCGUGAACUCCG-GCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 23924 | 0.68 | 0.323793 |
Target: 5'- cGCGUGguGUaacaGGCcg--GGGGCgGGCg -3' miRNA: 3'- -CGCGCguCAg---CCGugaaCUCCGgCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 18440 | 0.76 | 0.08769 |
Target: 5'- aGCGCGCAGccgucgaGGCGCU--GGGCCaGGCg -3' miRNA: 3'- -CGCGCGUCag-----CCGUGAacUCCGG-CCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 2841 | 0.69 | 0.262984 |
Target: 5'- aCGCGCAG-CGGCGCcagcaccagcgaGGGGCCuGGUu -3' miRNA: 3'- cGCGCGUCaGCCGUGaa----------CUCCGG-CCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 35506 | 0.69 | 0.286408 |
Target: 5'- cGUGCGC-GUgGGCGCgccgUGgguAGGCCgcGGCg -3' miRNA: 3'- -CGCGCGuCAgCCGUGa---AC---UCCGG--CCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 10196 | 0.7 | 0.239287 |
Target: 5'- gGCGCGCGGcuuuuuuUCGGUGCUggcuuccugcUGGgcGGCCGGg -3' miRNA: 3'- -CGCGCGUC-------AGCCGUGA----------ACU--CCGGCCg -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 13255 | 0.71 | 0.189555 |
Target: 5'- gGCGCGUGGuUCGaGgACUU--GGCCGGCg -3' miRNA: 3'- -CGCGCGUC-AGC-CgUGAAcuCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 19370 | 0.72 | 0.161366 |
Target: 5'- -gGCGCGGUCGGUggccGAGGCCgaGGCc -3' miRNA: 3'- cgCGCGUCAGCCGugaaCUCCGG--CCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 10915 | 0.75 | 0.112886 |
Target: 5'- uGCuGCaGCAGUuacUGGUGCUUGuGGCCGGUg -3' miRNA: 3'- -CG-CG-CGUCA---GCCGUGAACuCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 26013 | 0.66 | 0.40903 |
Target: 5'- uCGCGUGGUCGGC-CUcGu--CCGGCg -3' miRNA: 3'- cGCGCGUCAGCCGuGAaCuccGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 24971 | 0.66 | 0.399896 |
Target: 5'- uGC-CGCAcgaugCGGCAaacaucGAGGCCGGUa -3' miRNA: 3'- -CGcGCGUca---GCCGUgaa---CUCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 5508 | 0.67 | 0.373291 |
Target: 5'- -aGCGCcaacUCGGUGcCUUGguaguuccAGGCCGGCa -3' miRNA: 3'- cgCGCGuc--AGCCGU-GAAC--------UCCGGCCG- -5' |
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26672 | 5' | -59.5 | NC_005808.1 | + | 5432 | 0.68 | 0.339733 |
Target: 5'- -gGCGCGGauggCGGCGUgggcGAGGUCGGUa -3' miRNA: 3'- cgCGCGUCa---GCCGUGaa--CUCCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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