Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26673 | 3' | -50.3 | NC_005808.1 | + | 27542 | 1.13 | 0.001274 |
Target: 5'- uCAGUCGAACAUUGCCCGCAUCAACGCg -3' miRNA: 3'- -GUCAGCUUGUAACGGGCGUAGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 10852 | 0.75 | 0.410546 |
Target: 5'- uGGUCGAGCAg-GCCCuGCguggcuucgGUCGGCGCg -3' miRNA: 3'- gUCAGCUUGUaaCGGG-CG---------UAGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 6539 | 0.73 | 0.504482 |
Target: 5'- gGGUCGu-CGUcGCCCgaaucgccagGCGUCAGCGCa -3' miRNA: 3'- gUCAGCuuGUAaCGGG----------CGUAGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 15034 | 0.73 | 0.515511 |
Target: 5'- -cGUUGGuguugGCGaUGCCCGCGUUGAUGCg -3' miRNA: 3'- guCAGCU-----UGUaACGGGCGUAGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 39126 | 0.73 | 0.493556 |
Target: 5'- -cGUCGAACuc-GCCCGCGaacaUCGggGCGCg -3' miRNA: 3'- guCAGCUUGuaaCGGGCGU----AGU--UGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 34034 | 0.72 | 0.560515 |
Target: 5'- -uGUCGcGCcugucgcUGCCCGcCAUCGGCGCg -3' miRNA: 3'- guCAGCuUGua-----ACGGGC-GUAGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 9192 | 0.71 | 0.629728 |
Target: 5'- -cGUCG-ACGUUgGCCUGCucggCGGCGCg -3' miRNA: 3'- guCAGCuUGUAA-CGGGCGua--GUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 5007 | 0.7 | 0.698989 |
Target: 5'- aGGUCGGcGCA--GUCCGCuuUCAGCGCc -3' miRNA: 3'- gUCAGCU-UGUaaCGGGCGu-AGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 17922 | 0.7 | 0.676054 |
Target: 5'- uGGgcgUGGACGUgGCCCGCGgcgGGCGCg -3' miRNA: 3'- gUCa--GCUUGUAaCGGGCGUag-UUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 34552 | 0.7 | 0.710354 |
Target: 5'- uGGUCGAGCAgcgGUUgaGCGUCGAgGCu -3' miRNA: 3'- gUCAGCUUGUaa-CGGg-CGUAGUUgCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 4253 | 0.7 | 0.710354 |
Target: 5'- gUAGUCGG----UGCCgGcCGUCAGCGCc -3' miRNA: 3'- -GUCAGCUuguaACGGgC-GUAGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 21101 | 0.7 | 0.687551 |
Target: 5'- -cGUCGGugAgcgcguuuugcUUGCUgGUAUCGACGCu -3' miRNA: 3'- guCAGCUugU-----------AACGGgCGUAGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 8666 | 0.7 | 0.698989 |
Target: 5'- gCGGUCG-GCAUUGCgUGCcgC-GCGCa -3' miRNA: 3'- -GUCAGCuUGUAACGgGCGuaGuUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 2818 | 0.69 | 0.754828 |
Target: 5'- -cGUCGGGCcaggUGCUCGCggCcACGCg -3' miRNA: 3'- guCAGCUUGua--ACGGGCGuaGuUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 42078 | 0.69 | 0.721634 |
Target: 5'- aCGGcCGAACAgaaccGCCUGCAagccgccgCGGCGCa -3' miRNA: 3'- -GUCaGCUUGUaa---CGGGCGUa-------GUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 24785 | 0.69 | 0.732815 |
Target: 5'- gGGUCGuccuCGaUGCCCGCGUUGAaguCGCc -3' miRNA: 3'- gUCAGCuu--GUaACGGGCGUAGUU---GCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 5819 | 0.69 | 0.754828 |
Target: 5'- aUAGUCGGGCAUgGCgUGCcgCAGCa- -3' miRNA: 3'- -GUCAGCUUGUAaCGgGCGuaGUUGcg -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 21259 | 0.69 | 0.765631 |
Target: 5'- gGGUCGA----UGCCCaGCAugUCGGCGUa -3' miRNA: 3'- gUCAGCUuguaACGGG-CGU--AGUUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 15986 | 0.68 | 0.807189 |
Target: 5'- -uGUCGAACAggUGCgCCGC----GCGCa -3' miRNA: 3'- guCAGCUUGUa-ACG-GGCGuaguUGCG- -5' |
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26673 | 3' | -50.3 | NC_005808.1 | + | 3269 | 0.68 | 0.797074 |
Target: 5'- ----gGAACAUUuCCCGCG-CAACGCc -3' miRNA: 3'- gucagCUUGUAAcGGGCGUaGUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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