miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26673 3' -50.3 NC_005808.1 + 27542 1.13 0.001274
Target:  5'- uCAGUCGAACAUUGCCCGCAUCAACGCg -3'
miRNA:   3'- -GUCAGCUUGUAACGGGCGUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 20642 0.67 0.854468
Target:  5'- uCGGUCGuuccgcGCAcugUGCCCGCguugggccuugGUCGGCGg -3'
miRNA:   3'- -GUCAGCu-----UGUa--ACGGGCG-----------UAGUUGCg -5'
26673 3' -50.3 NC_005808.1 + 27198 0.68 0.786768
Target:  5'- uCGGUCGuccgGCAUcuucgccgGCCCGCAcgCgGACGCg -3'
miRNA:   3'- -GUCAGCu---UGUAa-------CGGGCGUa-G-UUGCG- -5'
26673 3' -50.3 NC_005808.1 + 31852 0.68 0.780497
Target:  5'- aAGUCGAGCGc-GCCCuuggcgagcagcaagGCGaCGACGCa -3'
miRNA:   3'- gUCAGCUUGUaaCGGG---------------CGUaGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 2818 0.69 0.754828
Target:  5'- -cGUCGGGCcaggUGCUCGCggCcACGCg -3'
miRNA:   3'- guCAGCUUGua--ACGGGCGuaGuUGCG- -5'
26673 3' -50.3 NC_005808.1 + 42078 0.69 0.721634
Target:  5'- aCGGcCGAACAgaaccGCCUGCAagccgccgCGGCGCa -3'
miRNA:   3'- -GUCaGCUUGUaa---CGGGCGUa-------GUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 2244 0.66 0.902616
Target:  5'- -cGcCGGGCcuugGCCgGCAguUCGACGCg -3'
miRNA:   3'- guCaGCUUGuaa-CGGgCGU--AGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 12598 0.66 0.902616
Target:  5'- gCAGUUgGAGCAcgaugGCCCGU-UCGACGg -3'
miRNA:   3'- -GUCAG-CUUGUaa---CGGGCGuAGUUGCg -5'
26673 3' -50.3 NC_005808.1 + 34054 0.66 0.871639
Target:  5'- aGGUCGAGCGcgGCCUGCGaUAccuGgGCa -3'
miRNA:   3'- gUCAGCUUGUaaCGGGCGUaGU---UgCG- -5'
26673 3' -50.3 NC_005808.1 + 26869 0.68 0.807189
Target:  5'- -uGUCGAGCGcaugGCCuCGCGccaguUCGAUGCc -3'
miRNA:   3'- guCAGCUUGUaa--CGG-GCGU-----AGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 5819 0.69 0.754828
Target:  5'- aUAGUCGGGCAUgGCgUGCcgCAGCa- -3'
miRNA:   3'- -GUCAGCUUGUAaCGgGCGuaGUUGcg -5'
26673 3' -50.3 NC_005808.1 + 39126 0.73 0.493556
Target:  5'- -cGUCGAACuc-GCCCGCGaacaUCGggGCGCg -3'
miRNA:   3'- guCAGCUUGuaaCGGGCGU----AGU--UGCG- -5'
26673 3' -50.3 NC_005808.1 + 6485 0.66 0.879815
Target:  5'- -cGcCGcGCAg-GCCCGCAUUcACGCg -3'
miRNA:   3'- guCaGCuUGUaaCGGGCGUAGuUGCG- -5'
26673 3' -50.3 NC_005808.1 + 17922 0.7 0.676054
Target:  5'- uGGgcgUGGACGUgGCCCGCGgcgGGCGCg -3'
miRNA:   3'- gUCa--GCUUGUAaCGGGCGUag-UUGCG- -5'
26673 3' -50.3 NC_005808.1 + 32871 0.68 0.786768
Target:  5'- ---aCGAGCAguucGCCCGCGgcuUCGAgGCg -3'
miRNA:   3'- gucaGCUUGUaa--CGGGCGU---AGUUgCG- -5'
26673 3' -50.3 NC_005808.1 + 37528 0.66 0.887707
Target:  5'- gCGGUCG-GCAaUGCCgacaaCAUCAAUGCa -3'
miRNA:   3'- -GUCAGCuUGUaACGGgc---GUAGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 39540 0.66 0.905455
Target:  5'- aAGUgGGgcGCAUucucggcuccuggauUGCCCGCGUgAAuCGCa -3'
miRNA:   3'- gUCAgCU--UGUA---------------ACGGGCGUAgUU-GCG- -5'
26673 3' -50.3 NC_005808.1 + 5007 0.7 0.698989
Target:  5'- aGGUCGGcGCA--GUCCGCuuUCAGCGCc -3'
miRNA:   3'- gUCAGCU-UGUaaCGGGCGu-AGUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 33000 0.67 0.854468
Target:  5'- -cGUCGAACucacGCCCGaggugcgCAACGUg -3'
miRNA:   3'- guCAGCUUGuaa-CGGGCgua----GUUGCG- -5'
26673 3' -50.3 NC_005808.1 + 15986 0.68 0.807189
Target:  5'- -uGUCGAACAggUGCgCCGC----GCGCa -3'
miRNA:   3'- guCAGCUUGUa-ACG-GGCGuaguUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.