miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26673 5' -52.9 NC_005808.1 + 41020 0.67 0.714196
Target:  5'- uGugGCagGACGUGGaggacuugaGCACCAUCGAGc -3'
miRNA:   3'- gUugUGg-UUGCGCC---------UGUGGUAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 38872 0.68 0.657958
Target:  5'- cCAcCACCGGCGUgaacggcacGGGCGCCA-CGAGc -3'
miRNA:   3'- -GUuGUGGUUGCG---------CCUGUGGUaGCUCa -5'
26673 5' -52.9 NC_005808.1 + 38266 0.75 0.281649
Target:  5'- cCAGCAUCAAgGCuGGCACCAUCGuGg -3'
miRNA:   3'- -GUUGUGGUUgCGcCUGUGGUAGCuCa -5'
26673 5' -52.9 NC_005808.1 + 37862 0.68 0.680614
Target:  5'- cCGugGCCGAgaacauCGCGGuCAUCAUCGAa- -3'
miRNA:   3'- -GUugUGGUU------GCGCCuGUGGUAGCUca -5'
26673 5' -52.9 NC_005808.1 + 37645 0.66 0.746998
Target:  5'- gCAGCGCgAuACGCGG-CugCAUCGuGg -3'
miRNA:   3'- -GUUGUGgU-UGCGCCuGugGUAGCuCa -5'
26673 5' -52.9 NC_005808.1 + 37549 0.66 0.74592
Target:  5'- ---gGCCugUGCucaagcaGGACGCCAUCGAGc -3'
miRNA:   3'- guugUGGuuGCG-------CCUGUGGUAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 37358 0.67 0.703072
Target:  5'- cCAACGCCAACGUcaACACCGUgGcGUc -3'
miRNA:   3'- -GUUGUGGUUGCGccUGUGGUAgCuCA- -5'
26673 5' -52.9 NC_005808.1 + 37019 0.72 0.409232
Target:  5'- uCGACACgGugGCGGccagcguugGCGCCGUCGAu- -3'
miRNA:   3'- -GUUGUGgUugCGCC---------UGUGGUAGCUca -5'
26673 5' -52.9 NC_005808.1 + 36983 0.69 0.58973
Target:  5'- cCAACAUCGACGcCGuGGCuACCAaCGAGg -3'
miRNA:   3'- -GUUGUGGUUGC-GC-CUG-UGGUaGCUCa -5'
26673 5' -52.9 NC_005808.1 + 36156 0.66 0.757699
Target:  5'- gCGACGCCuuCGCGGGCGgUGgugucgCGAGc -3'
miRNA:   3'- -GUUGUGGuuGCGCCUGUgGUa-----GCUCa -5'
26673 5' -52.9 NC_005808.1 + 34427 0.71 0.478835
Target:  5'- gGACGCCAGCGCcuuccugGGccGCAUCAUCGAcGUg -3'
miRNA:   3'- gUUGUGGUUGCG-------CC--UGUGGUAGCU-CA- -5'
26673 5' -52.9 NC_005808.1 + 34013 0.68 0.646586
Target:  5'- cCAGCACCAggccgcacGCGCGGccuacgACGCCcaggaugagGUCGAGc -3'
miRNA:   3'- -GUUGUGGU--------UGCGCC------UGUGG---------UAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 33283 0.67 0.736171
Target:  5'- -cGCGCCGACGUGcGcCGCCAggucgcCGAGg -3'
miRNA:   3'- guUGUGGUUGCGC-CuGUGGUa-----GCUCa -5'
26673 5' -52.9 NC_005808.1 + 32291 0.66 0.751294
Target:  5'- aAACACCAGCGCGuugcgcgaccucaucGcCGCCAUCaAGg -3'
miRNA:   3'- gUUGUGGUUGCGC---------------CuGUGGUAGcUCa -5'
26673 5' -52.9 NC_005808.1 + 31523 0.68 0.646586
Target:  5'- -cGCGCgCGACcCGGACACguUCGAGc -3'
miRNA:   3'- guUGUG-GUUGcGCCUGUGguAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 30632 0.67 0.703072
Target:  5'- -cGCACgaCAACGUGGACAacaugaccggCAUCGAGUc -3'
miRNA:   3'- guUGUG--GUUGCGCCUGUg---------GUAGCUCA- -5'
26673 5' -52.9 NC_005808.1 + 30540 0.67 0.736171
Target:  5'- gGACACCAu--CGG-CGCCAUCGAc- -3'
miRNA:   3'- gUUGUGGUugcGCCuGUGGUAGCUca -5'
26673 5' -52.9 NC_005808.1 + 29853 0.66 0.788928
Target:  5'- -cGCGCCAagcgucuggGCGCGGcacccaGCACCAaCGGGc -3'
miRNA:   3'- guUGUGGU---------UGCGCC------UGUGGUaGCUCa -5'
26673 5' -52.9 NC_005808.1 + 29427 0.7 0.543755
Target:  5'- gGGCGCCcAGCGCGGccgACACuggccgaCAUCGAGg -3'
miRNA:   3'- gUUGUGG-UUGCGCC---UGUG-------GUAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 29041 0.66 0.746998
Target:  5'- uCAACAUCGcCGUGGGCACC---GAGUc -3'
miRNA:   3'- -GUUGUGGUuGCGCCUGUGGuagCUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.