miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26673 5' -52.9 NC_005808.1 + 5573 0.72 0.399675
Target:  5'- aCGGCGCCAACGCuGGcCGCCAcCGuGUc -3'
miRNA:   3'- -GUUGUGGUUGCG-CCuGUGGUaGCuCA- -5'
26673 5' -52.9 NC_005808.1 + 14858 0.67 0.725233
Target:  5'- cCAGCGCCGcACGCuGGGCGCCuUUaAGUu -3'
miRNA:   3'- -GUUGUGGU-UGCG-CCUGUGGuAGcUCA- -5'
26673 5' -52.9 NC_005808.1 + 23097 0.67 0.736171
Target:  5'- cCGACGCCAACgGCGG-CGCCcacggCGAc- -3'
miRNA:   3'- -GUUGUGGUUG-CGCCuGUGGua---GCUca -5'
26673 5' -52.9 NC_005808.1 + 37549 0.66 0.74592
Target:  5'- ---gGCCugUGCucaagcaGGACGCCAUCGAGc -3'
miRNA:   3'- guugUGGuuGCG-------CCUGUGGUAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 37645 0.66 0.746998
Target:  5'- gCAGCGCgAuACGCGG-CugCAUCGuGg -3'
miRNA:   3'- -GUUGUGgU-UGCGCCuGugGUAGCuCa -5'
26673 5' -52.9 NC_005808.1 + 32291 0.66 0.751294
Target:  5'- aAACACCAGCGCGuugcgcgaccucaucGcCGCCAUCaAGg -3'
miRNA:   3'- gUUGUGGUUGCGC---------------CuGUGGUAGcUCa -5'
26673 5' -52.9 NC_005808.1 + 36156 0.66 0.757699
Target:  5'- gCGACGCCuuCGCGGGCGgUGgugucgCGAGc -3'
miRNA:   3'- -GUUGUGGuuGCGCCUGUgGUa-----GCUCa -5'
26673 5' -52.9 NC_005808.1 + 23468 0.66 0.767213
Target:  5'- -cACGCCGGCGUGGaacagguGCGCCGU-GGGa -3'
miRNA:   3'- guUGUGGUUGCGCC-------UGUGGUAgCUCa -5'
26673 5' -52.9 NC_005808.1 + 13939 0.66 0.788928
Target:  5'- gCAGCGCCGugGacuGGAUGCCcUCGGa- -3'
miRNA:   3'- -GUUGUGGUugCg--CCUGUGGuAGCUca -5'
26673 5' -52.9 NC_005808.1 + 7766 0.67 0.725233
Target:  5'- gCAGCACCGGCGCGaucuGCGCCggCGu-- -3'
miRNA:   3'- -GUUGUGGUUGCGCc---UGUGGuaGCuca -5'
26673 5' -52.9 NC_005808.1 + 23751 0.67 0.714196
Target:  5'- gCAGCGCC-AUGCcGGCGCCAcCGGGc -3'
miRNA:   3'- -GUUGUGGuUGCGcCUGUGGUaGCUCa -5'
26673 5' -52.9 NC_005808.1 + 28398 0.68 0.646586
Target:  5'- uCGACGCCGGCgGCGcGGCGCCAguaGAu- -3'
miRNA:   3'- -GUUGUGGUUG-CGC-CUGUGGUag-CUca -5'
26673 5' -52.9 NC_005808.1 + 27167 0.72 0.448836
Target:  5'- -cGCGCCGcACGCGGAUGCC-UCGAc- -3'
miRNA:   3'- guUGUGGU-UGCGCCUGUGGuAGCUca -5'
26673 5' -52.9 NC_005808.1 + 34427 0.71 0.478835
Target:  5'- gGACGCCAGCGCcuuccugGGccGCAUCAUCGAcGUg -3'
miRNA:   3'- gUUGUGGUUGCG-------CC--UGUGGUAGCU-CA- -5'
26673 5' -52.9 NC_005808.1 + 19348 0.71 0.490469
Target:  5'- aGGCGCCAgGCgGCGGAauuGCCGUUGAGg -3'
miRNA:   3'- gUUGUGGU-UG-CGCCUg--UGGUAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 619 0.69 0.567185
Target:  5'- cCAGCAgCGcCGUGGACACggcguccggCGUCGAGUc -3'
miRNA:   3'- -GUUGUgGUuGCGCCUGUG---------GUAGCUCA- -5'
26673 5' -52.9 NC_005808.1 + 28680 0.69 0.58973
Target:  5'- --uCGCCAGCGCGGcGCGCCAcgUCGu-- -3'
miRNA:   3'- guuGUGGUUGCGCC-UGUGGU--AGCuca -5'
26673 5' -52.9 NC_005808.1 + 8877 0.69 0.601065
Target:  5'- aCGAaGCgGGCGCGGGCAUCAUUGuGa -3'
miRNA:   3'- -GUUgUGgUUGCGCCUGUGGUAGCuCa -5'
26673 5' -52.9 NC_005808.1 + 4676 0.69 0.612428
Target:  5'- gGGCACCAGCGCgccGGAUAgCGcggCGAGa -3'
miRNA:   3'- gUUGUGGUUGCG---CCUGUgGUa--GCUCa -5'
26673 5' -52.9 NC_005808.1 + 461 0.68 0.635199
Target:  5'- ---gGCCAGCuuGCGGGCGCUGUCGcGGUc -3'
miRNA:   3'- guugUGGUUG--CGCCUGUGGUAGC-UCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.