miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26673 5' -52.9 NC_005808.1 + 5108 0.69 0.601065
Target:  5'- cCAGCGuCCggUGCGGcugGCGCCGUUGAa- -3'
miRNA:   3'- -GUUGU-GGuuGCGCC---UGUGGUAGCUca -5'
26673 5' -52.9 NC_005808.1 + 27577 1.07 0.00182
Target:  5'- cCAACACCAACGCGGACACCAUCGAGUc -3'
miRNA:   3'- -GUUGUGGUUGCGCCUGUGGUAGCUCA- -5'
26673 5' -52.9 NC_005808.1 + 23680 0.83 0.091422
Target:  5'- aAACGCCAGCGCGGGCGCCGaccucaUCGAc- -3'
miRNA:   3'- gUUGUGGUUGCGCCUGUGGU------AGCUca -5'
26673 5' -52.9 NC_005808.1 + 38266 0.75 0.281649
Target:  5'- cCAGCAUCAAgGCuGGCACCAUCGuGg -3'
miRNA:   3'- -GUUGUGGUUgCGcCUGUGGUAGCuCa -5'
26673 5' -52.9 NC_005808.1 + 24201 0.7 0.522836
Target:  5'- --uCGCCGACGUGGccgccaccgGCGCCAUCGGc- -3'
miRNA:   3'- guuGUGGUUGCGCC---------UGUGGUAGCUca -5'
26673 5' -52.9 NC_005808.1 + 14773 0.74 0.336916
Target:  5'- cCGGCGCCAcCGCGGGCAgCGcgcgCGAGg -3'
miRNA:   3'- -GUUGUGGUuGCGCCUGUgGUa---GCUCa -5'
26673 5' -52.9 NC_005808.1 + 27610 0.71 0.459065
Target:  5'- gCAACGCCAAUGCcGACGCCAUUc--- -3'
miRNA:   3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5'
26673 5' -52.9 NC_005808.1 + 25989 0.7 0.51195
Target:  5'- --uCACCAACgGCGGcgccaACACCAUCGcGUg -3'
miRNA:   3'- guuGUGGUUG-CGCC-----UGUGGUAGCuCA- -5'
26673 5' -52.9 NC_005808.1 + 36983 0.69 0.58973
Target:  5'- cCAACAUCGACGcCGuGGCuACCAaCGAGg -3'
miRNA:   3'- -GUUGUGGUUGC-GC-CUG-UGGUaGCUCa -5'
26673 5' -52.9 NC_005808.1 + 34013 0.68 0.646586
Target:  5'- cCAGCACCAggccgcacGCGCGGccuacgACGCCcaggaugagGUCGAGc -3'
miRNA:   3'- -GUUGUGGU--------UGCGCC------UGUGG---------UAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 29853 0.66 0.788928
Target:  5'- -cGCGCCAagcgucuggGCGCGGcacccaGCACCAaCGGGc -3'
miRNA:   3'- guUGUGGU---------UGCGCC------UGUGGUaGCUCa -5'
26673 5' -52.9 NC_005808.1 + 37019 0.72 0.409232
Target:  5'- uCGACACgGugGCGGccagcguugGCGCCGUCGAu- -3'
miRNA:   3'- -GUUGUGgUugCGCC---------UGUGGUAGCUca -5'
26673 5' -52.9 NC_005808.1 + 17037 0.72 0.409232
Target:  5'- aCAACuCCGACGCcGACAUCAUCGGc- -3'
miRNA:   3'- -GUUGuGGUUGCGcCUGUGGUAGCUca -5'
26673 5' -52.9 NC_005808.1 + 18335 0.7 0.527215
Target:  5'- cCGGCGCCAcgcucaagguggcaaGcCGCgaGGACAUCAUCGAGa -3'
miRNA:   3'- -GUUGUGGU---------------U-GCG--CCUGUGGUAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 18432 0.7 0.555992
Target:  5'- -cACGCCGaaGCGCGca-GCCGUCGAGg -3'
miRNA:   3'- guUGUGGU--UGCGCcugUGGUAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 2854 0.72 0.418929
Target:  5'- cCAGCACCAGCGagGGGCcugguucgACCAguUCGAGg -3'
miRNA:   3'- -GUUGUGGUUGCg-CCUG--------UGGU--AGCUCa -5'
26673 5' -52.9 NC_005808.1 + 31523 0.68 0.646586
Target:  5'- -cGCGCgCGACcCGGACACguUCGAGc -3'
miRNA:   3'- guUGUG-GUUGcGCCUGUGguAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 8443 0.68 0.657958
Target:  5'- gAACAUCGGCGCGauguCGgCGUCGAGg -3'
miRNA:   3'- gUUGUGGUUGCGCcu--GUgGUAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 25037 0.7 0.51195
Target:  5'- aCAACACCGGCGCcGACAUCAUUc--- -3'
miRNA:   3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5'
26673 5' -52.9 NC_005808.1 + 29427 0.7 0.543755
Target:  5'- gGGCGCCcAGCGCGGccgACACuggccgaCAUCGAGg -3'
miRNA:   3'- gUUGUGG-UUGCGCC---UGUG-------GUAGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.