miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26673 5' -52.9 NC_005808.1 + 461 0.68 0.635199
Target:  5'- ---gGCCAGCuuGCGGGCGCUGUCGcGGUc -3'
miRNA:   3'- guugUGGUUG--CGCCUGUGGUAGC-UCA- -5'
26673 5' -52.9 NC_005808.1 + 619 0.69 0.567185
Target:  5'- cCAGCAgCGcCGUGGACACggcguccggCGUCGAGUc -3'
miRNA:   3'- -GUUGUgGUuGCGCCUGUG---------GUAGCUCA- -5'
26673 5' -52.9 NC_005808.1 + 2854 0.72 0.418929
Target:  5'- cCAGCACCAGCGagGGGCcugguucgACCAguUCGAGg -3'
miRNA:   3'- -GUUGUGGUUGCg-CCUG--------UGGU--AGCUCa -5'
26673 5' -52.9 NC_005808.1 + 2943 0.66 0.778677
Target:  5'- -cACACCGcgucGCGCGG-CA-CGUCGAGc -3'
miRNA:   3'- guUGUGGU----UGCGCCuGUgGUAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 4676 0.69 0.612428
Target:  5'- gGGCACCAGCGCgccGGAUAgCGcggCGAGa -3'
miRNA:   3'- gUUGUGGUUGCG---CCUGUgGUa--GCUCa -5'
26673 5' -52.9 NC_005808.1 + 5108 0.69 0.601065
Target:  5'- cCAGCGuCCggUGCGGcugGCGCCGUUGAa- -3'
miRNA:   3'- -GUUGU-GGuuGCGCC---UGUGGUAGCUca -5'
26673 5' -52.9 NC_005808.1 + 5573 0.72 0.399675
Target:  5'- aCGGCGCCAACGCuGGcCGCCAcCGuGUc -3'
miRNA:   3'- -GUUGUGGUUGCG-CCuGUGGUaGCuCA- -5'
26673 5' -52.9 NC_005808.1 + 7766 0.67 0.725233
Target:  5'- gCAGCACCGGCGCGaucuGCGCCggCGu-- -3'
miRNA:   3'- -GUUGUGGUUGCGCc---UGUGGuaGCuca -5'
26673 5' -52.9 NC_005808.1 + 8443 0.68 0.657958
Target:  5'- gAACAUCGGCGCGauguCGgCGUCGAGg -3'
miRNA:   3'- gUUGUGGUUGCGCcu--GUgGUAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 8877 0.69 0.601065
Target:  5'- aCGAaGCgGGCGCGGGCAUCAUUGuGa -3'
miRNA:   3'- -GUUgUGgUUGCGCCUGUGGUAGCuCa -5'
26673 5' -52.9 NC_005808.1 + 11292 0.67 0.729621
Target:  5'- cCAGCcggGCCAccACGCGGuCGCCAggcuucgcugccacgUCGGGg -3'
miRNA:   3'- -GUUG---UGGU--UGCGCCuGUGGU---------------AGCUCa -5'
26673 5' -52.9 NC_005808.1 + 13939 0.66 0.788928
Target:  5'- gCAGCGCCGugGacuGGAUGCCcUCGGa- -3'
miRNA:   3'- -GUUGUGGUugCg--CCUGUGGuAGCUca -5'
26673 5' -52.9 NC_005808.1 + 14735 0.67 0.691874
Target:  5'- gAugGCgAGCGCGGACACguUCuuGAGc -3'
miRNA:   3'- gUugUGgUUGCGCCUGUGguAG--CUCa -5'
26673 5' -52.9 NC_005808.1 + 14773 0.74 0.336916
Target:  5'- cCGGCGCCAcCGCGGGCAgCGcgcgCGAGg -3'
miRNA:   3'- -GUUGUGGUuGCGCCUGUgGUa---GCUCa -5'
26673 5' -52.9 NC_005808.1 + 14858 0.67 0.725233
Target:  5'- cCAGCGCCGcACGCuGGGCGCCuUUaAGUu -3'
miRNA:   3'- -GUUGUGGU-UGCG-CCUGUGGuAGcUCA- -5'
26673 5' -52.9 NC_005808.1 + 17037 0.72 0.409232
Target:  5'- aCAACuCCGACGCcGACAUCAUCGGc- -3'
miRNA:   3'- -GUUGuGGUUGCGcCUGUGGUAGCUca -5'
26673 5' -52.9 NC_005808.1 + 17808 0.68 0.646586
Target:  5'- gCGACuuCAACGCGGGCA---UCGAGg -3'
miRNA:   3'- -GUUGugGUUGCGCCUGUgguAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 18089 0.67 0.691874
Target:  5'- aCGugAUCGGCGUGGGCGCCAgccccuaCGAc- -3'
miRNA:   3'- -GUugUGGUUGCGCCUGUGGUa------GCUca -5'
26673 5' -52.9 NC_005808.1 + 18164 0.66 0.757699
Target:  5'- cCGAgGCC-GCGCGcGGCACCGacaaaUCGGGc -3'
miRNA:   3'- -GUUgUGGuUGCGC-CUGUGGU-----AGCUCa -5'
26673 5' -52.9 NC_005808.1 + 18335 0.7 0.527215
Target:  5'- cCGGCGCCAcgcucaagguggcaaGcCGCgaGGACAUCAUCGAGa -3'
miRNA:   3'- -GUUGUGGU---------------U-GCG--CCUGUGGUAGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.