Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 18432 | 0.7 | 0.555992 |
Target: 5'- -cACGCCGaaGCGCGca-GCCGUCGAGg -3' miRNA: 3'- guUGUGGU--UGCGCcugUGGUAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 19348 | 0.71 | 0.490469 |
Target: 5'- aGGCGCCAgGCgGCGGAauuGCCGUUGAGg -3' miRNA: 3'- gUUGUGGU-UG-CGCCUg--UGGUAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 22384 | 0.66 | 0.746998 |
Target: 5'- cCAACAgCCGGcCGCGGGCgcuGCCAagacCGAGg -3' miRNA: 3'- -GUUGU-GGUU-GCGCCUG---UGGUa---GCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 23097 | 0.67 | 0.736171 |
Target: 5'- cCGACGCCAACgGCGG-CGCCcacggCGAc- -3' miRNA: 3'- -GUUGUGGUUG-CGCCuGUGGua---GCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 23468 | 0.66 | 0.767213 |
Target: 5'- -cACGCCGGCGUGGaacagguGCGCCGU-GGGa -3' miRNA: 3'- guUGUGGUUGCGCC-------UGUGGUAgCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 23680 | 0.83 | 0.091422 |
Target: 5'- aAACGCCAGCGCGGGCGCCGaccucaUCGAc- -3' miRNA: 3'- gUUGUGGUUGCGCCUGUGGU------AGCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 23751 | 0.67 | 0.714196 |
Target: 5'- gCAGCGCC-AUGCcGGCGCCAcCGGGc -3' miRNA: 3'- -GUUGUGGuUGCGcCUGUGGUaGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 24201 | 0.7 | 0.522836 |
Target: 5'- --uCGCCGACGUGGccgccaccgGCGCCAUCGGc- -3' miRNA: 3'- guuGUGGUUGCGCC---------UGUGGUAGCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 25037 | 0.7 | 0.51195 |
Target: 5'- aCAACACCGGCGCcGACAUCAUUc--- -3' miRNA: 3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 25184 | 0.67 | 0.714196 |
Target: 5'- uCAAgGgCGACGUGGGCGCCGcugaaUCGAa- -3' miRNA: 3'- -GUUgUgGUUGCGCCUGUGGU-----AGCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 25989 | 0.7 | 0.51195 |
Target: 5'- --uCACCAACgGCGGcgccaACACCAUCGcGUg -3' miRNA: 3'- guuGUGGUUG-CGCC-----UGUGGUAGCuCA- -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 26753 | 0.67 | 0.736171 |
Target: 5'- uGGCACCAGCacgacaCGGACGgCGuguUCGAGUc -3' miRNA: 3'- gUUGUGGUUGc-----GCCUGUgGU---AGCUCA- -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 26895 | 0.66 | 0.746998 |
Target: 5'- uCGAUGCCcAgGCGGACGCCuucuucGUCGAu- -3' miRNA: 3'- -GUUGUGGuUgCGCCUGUGG------UAGCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 27167 | 0.72 | 0.448836 |
Target: 5'- -cGCGCCGcACGCGGAUGCC-UCGAc- -3' miRNA: 3'- guUGUGGU-UGCGCCUGUGGuAGCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 27218 | 0.66 | 0.778677 |
Target: 5'- cCGGC-CCGcACGCGGACGCgcuCAcCGAGg -3' miRNA: 3'- -GUUGuGGU-UGCGCCUGUG---GUaGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 27558 | 0.66 | 0.757699 |
Target: 5'- -cGCAUCAACGCGGGCAUCg------ -3' miRNA: 3'- guUGUGGUUGCGCCUGUGGuagcuca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 27577 | 1.07 | 0.00182 |
Target: 5'- cCAACACCAACGCGGACACCAUCGAGUc -3' miRNA: 3'- -GUUGUGGUUGCGCCUGUGGUAGCUCA- -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 27610 | 0.71 | 0.459065 |
Target: 5'- gCAACGCCAAUGCcGACGCCAUUc--- -3' miRNA: 3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 28398 | 0.68 | 0.646586 |
Target: 5'- uCGACGCCGGCgGCGcGGCGCCAguaGAu- -3' miRNA: 3'- -GUUGUGGUUG-CGC-CUGUGGUag-CUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 28680 | 0.69 | 0.58973 |
Target: 5'- --uCGCCAGCGCGGcGCGCCAcgUCGu-- -3' miRNA: 3'- guuGUGGUUGCGCC-UGUGGU--AGCuca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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