miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26673 5' -52.9 NC_005808.1 + 28680 0.69 0.58973
Target:  5'- --uCGCCAGCGCGGcGCGCCAcgUCGu-- -3'
miRNA:   3'- guuGUGGUUGCGCC-UGUGGU--AGCuca -5'
26673 5' -52.9 NC_005808.1 + 8877 0.69 0.601065
Target:  5'- aCGAaGCgGGCGCGGGCAUCAUUGuGa -3'
miRNA:   3'- -GUUgUGgUUGCGCCUGUGGUAGCuCa -5'
26673 5' -52.9 NC_005808.1 + 5108 0.69 0.601065
Target:  5'- cCAGCGuCCggUGCGGcugGCGCCGUUGAa- -3'
miRNA:   3'- -GUUGU-GGuuGCGCC---UGUGGUAGCUca -5'
26673 5' -52.9 NC_005808.1 + 4676 0.69 0.612428
Target:  5'- gGGCACCAGCGCgccGGAUAgCGcggCGAGa -3'
miRNA:   3'- gUUGUGGUUGCG---CCUGUgGUa--GCUCa -5'
26673 5' -52.9 NC_005808.1 + 461 0.68 0.635199
Target:  5'- ---gGCCAGCuuGCGGGCGCUGUCGcGGUc -3'
miRNA:   3'- guugUGGUUG--CGCCUGUGGUAGC-UCA- -5'
26673 5' -52.9 NC_005808.1 + 28398 0.68 0.646586
Target:  5'- uCGACGCCGGCgGCGcGGCGCCAguaGAu- -3'
miRNA:   3'- -GUUGUGGUUG-CGC-CUGUGGUag-CUca -5'
26673 5' -52.9 NC_005808.1 + 17808 0.68 0.646586
Target:  5'- gCGACuuCAACGCGGGCA---UCGAGg -3'
miRNA:   3'- -GUUGugGUUGCGCCUGUgguAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 31523 0.68 0.646586
Target:  5'- -cGCGCgCGACcCGGACACguUCGAGc -3'
miRNA:   3'- guUGUG-GUUGcGCCUGUGguAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 34013 0.68 0.646586
Target:  5'- cCAGCACCAggccgcacGCGCGGccuacgACGCCcaggaugagGUCGAGc -3'
miRNA:   3'- -GUUGUGGU--------UGCGCC------UGUGG---------UAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 8443 0.68 0.657958
Target:  5'- gAACAUCGGCGCGauguCGgCGUCGAGg -3'
miRNA:   3'- gUUGUGGUUGCGCcu--GUgGUAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 38872 0.68 0.657958
Target:  5'- cCAcCACCGGCGUgaacggcacGGGCGCCA-CGAGc -3'
miRNA:   3'- -GUuGUGGUUGCG---------CCUGUGGUaGCUCa -5'
26673 5' -52.9 NC_005808.1 + 37862 0.68 0.680614
Target:  5'- cCGugGCCGAgaacauCGCGGuCAUCAUCGAa- -3'
miRNA:   3'- -GUugUGGUU------GCGCCuGUGGUAGCUca -5'
26673 5' -52.9 NC_005808.1 + 14735 0.67 0.691874
Target:  5'- gAugGCgAGCGCGGACACguUCuuGAGc -3'
miRNA:   3'- gUugUGgUUGCGCCUGUGguAG--CUCa -5'
26673 5' -52.9 NC_005808.1 + 18089 0.67 0.691874
Target:  5'- aCGugAUCGGCGUGGGCGCCAgccccuaCGAc- -3'
miRNA:   3'- -GUugUGGUUGCGCCUGUGGUa------GCUca -5'
26673 5' -52.9 NC_005808.1 + 30632 0.67 0.703072
Target:  5'- -cGCACgaCAACGUGGACAacaugaccggCAUCGAGUc -3'
miRNA:   3'- guUGUG--GUUGCGCCUGUg---------GUAGCUCA- -5'
26673 5' -52.9 NC_005808.1 + 37358 0.67 0.703072
Target:  5'- cCAACGCCAACGUcaACACCGUgGcGUc -3'
miRNA:   3'- -GUUGUGGUUGCGccUGUGGUAgCuCA- -5'
26673 5' -52.9 NC_005808.1 + 23751 0.67 0.714196
Target:  5'- gCAGCGCC-AUGCcGGCGCCAcCGGGc -3'
miRNA:   3'- -GUUGUGGuUGCGcCUGUGGUaGCUCa -5'
26673 5' -52.9 NC_005808.1 + 25184 0.67 0.714196
Target:  5'- uCAAgGgCGACGUGGGCGCCGcugaaUCGAa- -3'
miRNA:   3'- -GUUgUgGUUGCGCCUGUGGU-----AGCUca -5'
26673 5' -52.9 NC_005808.1 + 41020 0.67 0.714196
Target:  5'- uGugGCagGACGUGGaggacuugaGCACCAUCGAGc -3'
miRNA:   3'- gUugUGg-UUGCGCC---------UGUGGUAGCUCa -5'
26673 5' -52.9 NC_005808.1 + 7766 0.67 0.725233
Target:  5'- gCAGCACCGGCGCGaucuGCGCCggCGu-- -3'
miRNA:   3'- -GUUGUGGUUGCGCc---UGUGGuaGCuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.