Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 29427 | 0.7 | 0.543755 |
Target: 5'- gGGCGCCcAGCGCGGccgACACuggccgaCAUCGAGg -3' miRNA: 3'- gUUGUGG-UUGCGCC---UGUG-------GUAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 18432 | 0.7 | 0.555992 |
Target: 5'- -cACGCCGaaGCGCGca-GCCGUCGAGg -3' miRNA: 3'- guUGUGGU--UGCGCcugUGGUAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 36983 | 0.69 | 0.58973 |
Target: 5'- cCAACAUCGACGcCGuGGCuACCAaCGAGg -3' miRNA: 3'- -GUUGUGGUUGC-GC-CUG-UGGUaGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 5108 | 0.69 | 0.601065 |
Target: 5'- cCAGCGuCCggUGCGGcugGCGCCGUUGAa- -3' miRNA: 3'- -GUUGU-GGuuGCGCC---UGUGGUAGCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 17808 | 0.68 | 0.646586 |
Target: 5'- gCGACuuCAACGCGGGCA---UCGAGg -3' miRNA: 3'- -GUUGugGUUGCGCCUGUgguAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 31523 | 0.68 | 0.646586 |
Target: 5'- -cGCGCgCGACcCGGACACguUCGAGc -3' miRNA: 3'- guUGUG-GUUGcGCCUGUGguAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 34013 | 0.68 | 0.646586 |
Target: 5'- cCAGCACCAggccgcacGCGCGGccuacgACGCCcaggaugagGUCGAGc -3' miRNA: 3'- -GUUGUGGU--------UGCGCC------UGUGG---------UAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 8443 | 0.68 | 0.657958 |
Target: 5'- gAACAUCGGCGCGauguCGgCGUCGAGg -3' miRNA: 3'- gUUGUGGUUGCGCcu--GUgGUAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 38872 | 0.68 | 0.657958 |
Target: 5'- cCAcCACCGGCGUgaacggcacGGGCGCCA-CGAGc -3' miRNA: 3'- -GUuGUGGUUGCG---------CCUGUGGUaGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 18335 | 0.7 | 0.527215 |
Target: 5'- cCGGCGCCAcgcucaagguggcaaGcCGCgaGGACAUCAUCGAGa -3' miRNA: 3'- -GUUGUGGU---------------U-GCG--CCUGUGGUAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 24201 | 0.7 | 0.522836 |
Target: 5'- --uCGCCGACGUGGccgccaccgGCGCCAUCGGc- -3' miRNA: 3'- guuGUGGUUGCGCC---------UGUGGUAGCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 25989 | 0.7 | 0.51195 |
Target: 5'- --uCACCAACgGCGGcgccaACACCAUCGcGUg -3' miRNA: 3'- guuGUGGUUG-CGCC-----UGUGGUAGCuCA- -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 23680 | 0.83 | 0.091422 |
Target: 5'- aAACGCCAGCGCGGGCGCCGaccucaUCGAc- -3' miRNA: 3'- gUUGUGGUUGCGCCUGUGGU------AGCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 38266 | 0.75 | 0.281649 |
Target: 5'- cCAGCAUCAAgGCuGGCACCAUCGuGg -3' miRNA: 3'- -GUUGUGGUUgCGcCUGUGGUAGCuCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 14773 | 0.74 | 0.336916 |
Target: 5'- cCGGCGCCAcCGCGGGCAgCGcgcgCGAGg -3' miRNA: 3'- -GUUGUGGUuGCGCCUGUgGUa---GCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 17037 | 0.72 | 0.409232 |
Target: 5'- aCAACuCCGACGCcGACAUCAUCGGc- -3' miRNA: 3'- -GUUGuGGUUGCGcCUGUGGUAGCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 37019 | 0.72 | 0.409232 |
Target: 5'- uCGACACgGugGCGGccagcguugGCGCCGUCGAu- -3' miRNA: 3'- -GUUGUGgUugCGCC---------UGUGGUAGCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 2854 | 0.72 | 0.418929 |
Target: 5'- cCAGCACCAGCGagGGGCcugguucgACCAguUCGAGg -3' miRNA: 3'- -GUUGUGGUUGCg-CCUG--------UGGU--AGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 27610 | 0.71 | 0.459065 |
Target: 5'- gCAACGCCAAUGCcGACGCCAUUc--- -3' miRNA: 3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 25037 | 0.7 | 0.51195 |
Target: 5'- aCAACACCGGCGCcGACAUCAUUc--- -3' miRNA: 3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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