Results 21 - 40 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 27577 | 1.07 | 0.00182 |
Target: 5'- cCAACACCAACGCGGACACCAUCGAGUc -3' miRNA: 3'- -GUUGUGGUUGCGCCUGUGGUAGCUCA- -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 22384 | 0.66 | 0.746998 |
Target: 5'- cCAACAgCCGGcCGCGGGCgcuGCCAagacCGAGg -3' miRNA: 3'- -GUUGU-GGUU-GCGCCUG---UGGUa---GCUCa -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 41020 | 0.67 | 0.714196 |
Target: 5'- uGugGCagGACGUGGaggacuugaGCACCAUCGAGc -3' miRNA: 3'- gUugUGg-UUGCGCC---------UGUGGUAGCUCa -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 30632 | 0.67 | 0.703072 |
Target: 5'- -cGCACgaCAACGUGGACAacaugaccggCAUCGAGUc -3' miRNA: 3'- guUGUG--GUUGCGCCUGUg---------GUAGCUCA- -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 27218 | 0.66 | 0.778677 |
Target: 5'- cCGGC-CCGcACGCGGACGCgcuCAcCGAGg -3' miRNA: 3'- -GUUGuGGU-UGCGCCUGUG---GUaGCUCa -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 27558 | 0.66 | 0.757699 |
Target: 5'- -cGCAUCAACGCGGGCAUCg------ -3' miRNA: 3'- guUGUGGUUGCGCCUGUGGuagcuca -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 30540 | 0.67 | 0.736171 |
Target: 5'- gGACACCAu--CGG-CGCCAUCGAc- -3' miRNA: 3'- gUUGUGGUugcGCCuGUGGUAGCUca -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 18089 | 0.67 | 0.691874 |
Target: 5'- aCGugAUCGGCGUGGGCGCCAgccccuaCGAc- -3' miRNA: 3'- -GUugUGGUUGCGCCUGUGGUa------GCUca -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 26895 | 0.66 | 0.746998 |
Target: 5'- uCGAUGCCcAgGCGGACGCCuucuucGUCGAu- -3' miRNA: 3'- -GUUGUGGuUgCGCCUGUGG------UAGCUca -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 14735 | 0.67 | 0.691874 |
Target: 5'- gAugGCgAGCGCGGACACguUCuuGAGc -3' miRNA: 3'- gUugUGgUUGCGCCUGUGguAG--CUCa -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 33283 | 0.67 | 0.736171 |
Target: 5'- -cGCGCCGACGUGcGcCGCCAggucgcCGAGg -3' miRNA: 3'- guUGUGGUUGCGC-CuGUGGUa-----GCUCa -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 29041 | 0.66 | 0.746998 |
Target: 5'- uCAACAUCGcCGUGGGCACC---GAGUc -3' miRNA: 3'- -GUUGUGGUuGCGCCUGUGGuagCUCA- -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 26753 | 0.67 | 0.736171 |
Target: 5'- uGGCACCAGCacgacaCGGACGgCGuguUCGAGUc -3' miRNA: 3'- gUUGUGGUUGc-----GCCUGUgGU---AGCUCA- -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 11292 | 0.67 | 0.729621 |
Target: 5'- cCAGCcggGCCAccACGCGGuCGCCAggcuucgcugccacgUCGGGg -3' miRNA: 3'- -GUUG---UGGU--UGCGCCuGUGGU---------------AGCUCa -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 25184 | 0.67 | 0.714196 |
Target: 5'- uCAAgGgCGACGUGGGCGCCGcugaaUCGAa- -3' miRNA: 3'- -GUUgUgGUUGCGCCUGUGGU-----AGCUca -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 37358 | 0.67 | 0.703072 |
Target: 5'- cCAACGCCAACGUcaACACCGUgGcGUc -3' miRNA: 3'- -GUUGUGGUUGCGccUGUGGUAgCuCA- -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 29853 | 0.66 | 0.788928 |
Target: 5'- -cGCGCCAagcgucuggGCGCGGcacccaGCACCAaCGGGc -3' miRNA: 3'- guUGUGGU---------UGCGCC------UGUGGUaGCUCa -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 2943 | 0.66 | 0.778677 |
Target: 5'- -cACACCGcgucGCGCGG-CA-CGUCGAGc -3' miRNA: 3'- guUGUGGU----UGCGCCuGUgGUAGCUCa -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 18164 | 0.66 | 0.757699 |
Target: 5'- cCGAgGCC-GCGCGcGGCACCGacaaaUCGGGc -3' miRNA: 3'- -GUUgUGGuUGCGC-CUGUGGU-----AGCUCa -5' |
|||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 37862 | 0.68 | 0.680614 |
Target: 5'- cCGugGCCGAgaacauCGCGGuCAUCAUCGAa- -3' miRNA: 3'- -GUugUGGUU------GCGCCuGUGGUAGCUca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home