Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26673 | 5' | -52.9 | NC_005808.1 | + | 41020 | 0.67 | 0.714196 |
Target: 5'- uGugGCagGACGUGGaggacuugaGCACCAUCGAGc -3' miRNA: 3'- gUugUGg-UUGCGCC---------UGUGGUAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 11292 | 0.67 | 0.729621 |
Target: 5'- cCAGCcggGCCAccACGCGGuCGCCAggcuucgcugccacgUCGGGg -3' miRNA: 3'- -GUUG---UGGU--UGCGCCuGUGGU---------------AGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 14858 | 0.67 | 0.725233 |
Target: 5'- cCAGCGCCGcACGCuGGGCGCCuUUaAGUu -3' miRNA: 3'- -GUUGUGGU-UGCG-CCUGUGGuAGcUCA- -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 30540 | 0.67 | 0.736171 |
Target: 5'- gGACACCAu--CGG-CGCCAUCGAc- -3' miRNA: 3'- gUUGUGGUugcGCCuGUGGUAGCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 33283 | 0.67 | 0.736171 |
Target: 5'- -cGCGCCGACGUGcGcCGCCAggucgcCGAGg -3' miRNA: 3'- guUGUGGUUGCGC-CuGUGGUa-----GCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 23097 | 0.67 | 0.736171 |
Target: 5'- cCGACGCCAACgGCGG-CGCCcacggCGAc- -3' miRNA: 3'- -GUUGUGGUUG-CGCCuGUGGua---GCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 23751 | 0.67 | 0.714196 |
Target: 5'- gCAGCGCC-AUGCcGGCGCCAcCGGGc -3' miRNA: 3'- -GUUGUGGuUGCGcCUGUGGUaGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 7766 | 0.67 | 0.725233 |
Target: 5'- gCAGCACCGGCGCGaucuGCGCCggCGu-- -3' miRNA: 3'- -GUUGUGGUUGCGCc---UGUGGuaGCuca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 37862 | 0.68 | 0.680614 |
Target: 5'- cCGugGCCGAgaacauCGCGGuCAUCAUCGAa- -3' miRNA: 3'- -GUugUGGUU------GCGCCuGUGGUAGCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 38872 | 0.68 | 0.657958 |
Target: 5'- cCAcCACCGGCGUgaacggcacGGGCGCCA-CGAGc -3' miRNA: 3'- -GUuGUGGUUGCG---------CCUGUGGUaGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 8443 | 0.68 | 0.657958 |
Target: 5'- gAACAUCGGCGCGauguCGgCGUCGAGg -3' miRNA: 3'- gUUGUGGUUGCGCcu--GUgGUAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 461 | 0.68 | 0.635199 |
Target: 5'- ---gGCCAGCuuGCGGGCGCUGUCGcGGUc -3' miRNA: 3'- guugUGGUUG--CGCCUGUGGUAGC-UCA- -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 28398 | 0.68 | 0.646586 |
Target: 5'- uCGACGCCGGCgGCGcGGCGCCAguaGAu- -3' miRNA: 3'- -GUUGUGGUUG-CGC-CUGUGGUag-CUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 34013 | 0.68 | 0.646586 |
Target: 5'- cCAGCACCAggccgcacGCGCGGccuacgACGCCcaggaugagGUCGAGc -3' miRNA: 3'- -GUUGUGGU--------UGCGCC------UGUGG---------UAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 31523 | 0.68 | 0.646586 |
Target: 5'- -cGCGCgCGACcCGGACACguUCGAGc -3' miRNA: 3'- guUGUG-GUUGcGCCUGUGguAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 17808 | 0.68 | 0.646586 |
Target: 5'- gCGACuuCAACGCGGGCA---UCGAGg -3' miRNA: 3'- -GUUGugGUUGCGCCUGUgguAGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 36983 | 0.69 | 0.58973 |
Target: 5'- cCAACAUCGACGcCGuGGCuACCAaCGAGg -3' miRNA: 3'- -GUUGUGGUUGC-GC-CUG-UGGUaGCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 5108 | 0.69 | 0.601065 |
Target: 5'- cCAGCGuCCggUGCGGcugGCGCCGUUGAa- -3' miRNA: 3'- -GUUGU-GGuuGCGCC---UGUGGUAGCUca -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 4676 | 0.69 | 0.612428 |
Target: 5'- gGGCACCAGCGCgccGGAUAgCGcggCGAGa -3' miRNA: 3'- gUUGUGGUUGCG---CCUGUgGUa--GCUCa -5' |
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26673 | 5' | -52.9 | NC_005808.1 | + | 8877 | 0.69 | 0.601065 |
Target: 5'- aCGAaGCgGGCGCGGGCAUCAUUGuGa -3' miRNA: 3'- -GUUgUGgUUGCGCCUGUGGUAGCuCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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