miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 1687 0.66 0.684018
Target:  5'- -cGCGCagguagucgagaaAUUCGCCGUGggccggCGUGCCGg -3'
miRNA:   3'- guUGCGg------------UAGGCGGUAUa-----GCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 33419 0.66 0.677324
Target:  5'- cCAACGUCGacggCGCCAaguUGUCGcUGCCGg -3'
miRNA:   3'- -GUUGCGGUag--GCGGU---AUAGC-ACGGCg -5'
26677 3' -54.5 NC_005808.1 + 27669 0.66 0.677324
Target:  5'- gGGCGCCAccUCCaCCGUGgucUUGgaauacagGCCGCg -3'
miRNA:   3'- gUUGCGGU--AGGcGGUAU---AGCa-------CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 20275 0.66 0.677324
Target:  5'- uCGGCGCguUCggcacgGCCAgcagcAUCGUGCUGCc -3'
miRNA:   3'- -GUUGCGguAGg-----CGGUa----UAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 31498 0.66 0.677324
Target:  5'- uGACauaCCuugCCGCCGg--CGUGCUGCu -3'
miRNA:   3'- gUUGc--GGua-GGCGGUauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 10316 0.66 0.677324
Target:  5'- aCuuCGCCAguUUCGCCAggcCGUaGCCGUc -3'
miRNA:   3'- -GuuGCGGU--AGGCGGUauaGCA-CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4098 0.66 0.676206
Target:  5'- -uGCGCCGugguguuUCCGCCAgccUGcGCUGCa -3'
miRNA:   3'- guUGCGGU-------AGGCGGUauaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 2094 0.66 0.676206
Target:  5'- uCGGC-CCAgguggUCGCCGUGUCGUcgguauagauugcGCCGUu -3'
miRNA:   3'- -GUUGcGGUa----GGCGGUAUAGCA-------------CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 17294 0.66 0.670613
Target:  5'- cCGGCGCCGcgggcgcgcauccauUCCGgCAUAUgG-GCCGg -3'
miRNA:   3'- -GUUGCGGU---------------AGGCgGUAUAgCaCGGCg -5'
26677 3' -54.5 NC_005808.1 + 16454 0.66 0.666132
Target:  5'- aCGGCgaGCCGcUgCGCCAaAUC-UGCCGCg -3'
miRNA:   3'- -GUUG--CGGU-AgGCGGUaUAGcACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 15735 0.66 0.666132
Target:  5'- gCGAgGCCAUgCGCUcgAcauaccgcaccUCGuUGCCGCc -3'
miRNA:   3'- -GUUgCGGUAgGCGGuaU-----------AGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 34595 0.66 0.666132
Target:  5'- uGGCGCCAagggcacgUCCgacGCCGUG--GUGCUGCu -3'
miRNA:   3'- gUUGCGGU--------AGG---CGGUAUagCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 24694 0.66 0.666132
Target:  5'- -cACGCCcaggcuGUCCaucgguGCCAgucgGUCGgGCCGCu -3'
miRNA:   3'- guUGCGG------UAGG------CGGUa---UAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4178 0.66 0.666132
Target:  5'- ---aGCCggCCGCCucgauggcgggcAUGUUG-GCCGCg -3'
miRNA:   3'- guugCGGuaGGCGG------------UAUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 26157 0.66 0.6594
Target:  5'- aCGACGCCGUguucaacgCCGCCGgcgauuaccccgCG-GCCGUg -3'
miRNA:   3'- -GUUGCGGUA--------GGCGGUaua---------GCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 14701 0.66 0.654907
Target:  5'- --gUGCCAUCCGCgA---CGUGCUGg -3'
miRNA:   3'- guuGCGGUAGGCGgUauaGCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 16821 0.66 0.654907
Target:  5'- -cGCGCgCAUCgCgGCCA--UCGuUGCCGCc -3'
miRNA:   3'- guUGCG-GUAG-G-CGGUauAGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9490 0.66 0.653783
Target:  5'- gGGCGUCAugccagccuguUCCGCCGUggcgaacaguggcAUCaUGCUGCg -3'
miRNA:   3'- gUUGCGGU-----------AGGCGGUA-------------UAGcACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 190 0.67 0.644786
Target:  5'- cCGGCGUCAUccCCGCCAUcagcAUCaugguggcguagguaUGCCGCa -3'
miRNA:   3'- -GUUGCGGUA--GGCGGUA----UAGc--------------ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 5010 0.67 0.632402
Target:  5'- uCGGCGCaGUCCGCUu--UCaGcGCCGCg -3'
miRNA:   3'- -GUUGCGgUAGGCGGuauAG-CaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.