miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26681 5' -61.6 NC_005808.1 + 41288 0.68 0.218732
Target:  5'- cGGcCUGguggcCGUCGcCCUGGGCGCGGCg- -3'
miRNA:   3'- aCUuGAC-----GCGGC-GGACCCGCGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 39762 0.66 0.303699
Target:  5'- gGuGCUgGCGCCGCUgc-GCGUGGCCGc -3'
miRNA:   3'- aCuUGA-CGCGGCGGaccCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 38887 0.71 0.142804
Target:  5'- aUGAGCggaUGCGCCGCaugGGGCaGCGcgucGCCGg -3'
miRNA:   3'- -ACUUG---ACGCGGCGga-CCCG-CGC----UGGU- -5'
26681 5' -61.6 NC_005808.1 + 38143 0.66 0.296347
Target:  5'- gGAACUGgaagaagcCGCaCGCCUGGcGguguUGCGGCCGg -3'
miRNA:   3'- aCUUGAC--------GCG-GCGGACC-C----GCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 37600 0.67 0.284871
Target:  5'- cGGACUGCGCCGaCCUGcuguuCGCcaacgucauggaacuGACCAg -3'
miRNA:   3'- aCUUGACGCGGC-GGACcc---GCG---------------CUGGU- -5'
26681 5' -61.6 NC_005808.1 + 34371 0.66 0.318824
Target:  5'- -aAGCUGCugacgGCCGCCgaccaGCGCGACUAc -3'
miRNA:   3'- acUUGACG-----CGGCGGacc--CGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 34193 0.68 0.218164
Target:  5'- cGAACUGCucGCUGCCcgacacgUGGGCgGCGAUUc -3'
miRNA:   3'- aCUUGACG--CGGCGG-------ACCCG-CGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 34046 0.68 0.230344
Target:  5'- --cGCUGC-CCGCCaucGGCGCGGCUg -3'
miRNA:   3'- acuUGACGcGGCGGac-CCGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 33954 0.68 0.230344
Target:  5'- cGAguACgGCGCgGCCUGGG-GCGuuuCCGa -3'
miRNA:   3'- aCU--UGaCGCGgCGGACCCgCGCu--GGU- -5'
26681 5' -61.6 NC_005808.1 + 33911 0.67 0.282057
Target:  5'- cUGcGCgGCGCaCaCCUGGGCGCGcagcaGCCGc -3'
miRNA:   3'- -ACuUGaCGCG-GcGGACCCGCGC-----UGGU- -5'
26681 5' -61.6 NC_005808.1 + 33585 0.7 0.156602
Target:  5'- cGAACuggUGCGCCGCCUGcuggaagcgcccccGCGCGGCgAg -3'
miRNA:   3'- aCUUG---ACGCGGCGGACc-------------CGCGCUGgU- -5'
26681 5' -61.6 NC_005808.1 + 33362 0.76 0.058281
Target:  5'- gUGAACUGgaacUGCCGCC-GGGCGCG-CCGc -3'
miRNA:   3'- -ACUUGAC----GCGGCGGaCCCGCGCuGGU- -5'
26681 5' -61.6 NC_005808.1 + 32909 0.68 0.215347
Target:  5'- aGAACUGCgGCCacgGCCUGcacGGCggcuguucggccaggGCGACCAc -3'
miRNA:   3'- aCUUGACG-CGG---CGGAC---CCG---------------CGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 29930 0.68 0.213115
Target:  5'- cGAcAC-GCGCCGCgcaugaUGGGCGaCGACCc -3'
miRNA:   3'- aCU-UGaCGCGGCGg-----ACCCGC-GCUGGu -5'
26681 5' -61.6 NC_005808.1 + 29849 0.75 0.065324
Target:  5'- gGAGC-GCGCCaagcGUCUGGGCGCGGCa- -3'
miRNA:   3'- aCUUGaCGCGG----CGGACCCGCGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 29657 0.67 0.26832
Target:  5'- aUGAGgUaGcCGuuGCCcagcaGGGCGCGGCCGu -3'
miRNA:   3'- -ACUUgA-C-GCggCGGa----CCCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 28812 0.7 0.167956
Target:  5'- uUGAGCagccagcGCGCCGUCgucGGGuUGCGGCCGg -3'
miRNA:   3'- -ACUUGa------CGCGGCGGa--CCC-GCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 27863 0.66 0.311192
Target:  5'- --uGCUGCGCguacUGCCUGGG-GCuACCGg -3'
miRNA:   3'- acuUGACGCG----GCGGACCCgCGcUGGU- -5'
26681 5' -61.6 NC_005808.1 + 26833 0.67 0.26832
Target:  5'- -aGGCUGCGCCGCCccgaUGGaGCG-GGCgAa -3'
miRNA:   3'- acUUGACGCGGCGG----ACC-CGCgCUGgU- -5'
26681 5' -61.6 NC_005808.1 + 25786 1.08 0.000187
Target:  5'- gUGAACUGCGCCGCCUGGGCGCGACCAa -3'
miRNA:   3'- -ACUUGACGCGGCGGACCCGCGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.