miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 14023 0.66 0.821221
Target:  5'- cGCUGcCGGuggcCGACgugcgcgccgcgAugGCCGGCgGCCg -3'
miRNA:   3'- -CGAC-GCUuua-GCUG------------UugUGGCCG-CGG- -5'
26683 5' -52.6 NC_005808.1 + 19157 0.66 0.821221
Target:  5'- cGC-GCGAAccAUCcGCAucccgGCCGGCGUCg -3'
miRNA:   3'- -CGaCGCUU--UAGcUGUug---UGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 29778 0.66 0.821221
Target:  5'- cGCgugcGCGAGAuuUCGGCAuACGCUGucucGCGCUc -3'
miRNA:   3'- -CGa---CGCUUU--AGCUGU-UGUGGC----CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 33593 0.66 0.821221
Target:  5'- cGCUGgCGAAucCGGCAcggccacCGCUGGCGgCa -3'
miRNA:   3'- -CGAC-GCUUuaGCUGUu------GUGGCCGCgG- -5'
26683 5' -52.6 NC_005808.1 + 9532 0.66 0.821221
Target:  5'- cGCUGCGcgacccgauGAAgcgcaCGACAGCACgCGGgaacuugcacuUGCCg -3'
miRNA:   3'- -CGACGC---------UUUa----GCUGUUGUG-GCC-----------GCGG- -5'
26683 5' -52.6 NC_005808.1 + 23825 0.66 0.821221
Target:  5'- cCUuuGAAGU--GCGGCACCGGCGUg -3'
miRNA:   3'- cGAcgCUUUAgcUGUUGUGGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 14402 0.66 0.821221
Target:  5'- gGCguaGCGAAGcUgGGCGuCGCCaGGCGCg -3'
miRNA:   3'- -CGa--CGCUUU-AgCUGUuGUGG-CCGCGg -5'
26683 5' -52.6 NC_005808.1 + 8767 0.66 0.821221
Target:  5'- -gUGCcgcuUCgGGCAGCACgCGGCGCa -3'
miRNA:   3'- cgACGcuuuAG-CUGUUGUG-GCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 16061 0.66 0.821221
Target:  5'- --cGCGcAcgUGGCcgccGCGCgCGGCGCCg -3'
miRNA:   3'- cgaCGCuUuaGCUGu---UGUG-GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 16370 0.66 0.821221
Target:  5'- uCUGCGGcuuguugguAGUgcCGGCAaaGCAUCGGCGUUg -3'
miRNA:   3'- cGACGCU---------UUA--GCUGU--UGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 4209 0.66 0.821221
Target:  5'- ---uUGGAAUCGGCGcGCACC-GUGCCa -3'
miRNA:   3'- cgacGCUUUAGCUGU-UGUGGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 32721 0.66 0.821221
Target:  5'- cGCgccugGcCGAGAa--GCAgcGCGCCGGUGCCa -3'
miRNA:   3'- -CGa----C-GCUUUagcUGU--UGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 25166 0.66 0.820273
Target:  5'- uGCUGgCGggGccacugcUCaagGGCGACGUgGGCGCCg -3'
miRNA:   3'- -CGAC-GCuuU-------AG---CUGUUGUGgCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 41902 0.66 0.811643
Target:  5'- --gGCGguAUCuugGGCGcCcgGCCGGCGCCg -3'
miRNA:   3'- cgaCGCuuUAG---CUGUuG--UGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 39846 0.66 0.811643
Target:  5'- gGCaGUGG--UCGGCAcgcccgagcaGCGCCGG-GCCg -3'
miRNA:   3'- -CGaCGCUuuAGCUGU----------UGUGGCCgCGG- -5'
26683 5' -52.6 NC_005808.1 + 16436 0.66 0.811643
Target:  5'- uCUGCGAccgcAUCgcaGACGGCgaGCCGcuGCGCCa -3'
miRNA:   3'- cGACGCUu---UAG---CUGUUG--UGGC--CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 23398 0.66 0.811643
Target:  5'- --cGCGGAGaaCGGCcagaacaucaucGACGCCGGCGgCa -3'
miRNA:   3'- cgaCGCUUUa-GCUG------------UUGUGGCCGCgG- -5'
26683 5' -52.6 NC_005808.1 + 29001 0.66 0.811643
Target:  5'- cCU-CGuuAUCGACGuagGCgACCaGGCGCCg -3'
miRNA:   3'- cGAcGCuuUAGCUGU---UG-UGG-CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 28505 0.66 0.811643
Target:  5'- aUUGcCGAAcUCGGuCAucuGCCGGCGCUg -3'
miRNA:   3'- cGAC-GCUUuAGCU-GUug-UGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 32175 0.66 0.811643
Target:  5'- aGCUGUugGAAAUgaaaagUGGCGAggcCAUCGGCGCg -3'
miRNA:   3'- -CGACG--CUUUA------GCUGUU---GUGGCCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.