miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26687 5' -48.7 NC_005808.1 + 20083 0.66 0.957054
Target:  5'- aUGUCCaguuccUUGGCGAcuucggaaAAGGCGcCCAGCa -3'
miRNA:   3'- -ACAGGcuu---GACUGCU--------UUUUGC-GGUCG- -5'
26687 5' -48.7 NC_005808.1 + 2195 0.66 0.957054
Target:  5'- --aCCGcAUuccagGGCGAGAAACGCCucGCg -3'
miRNA:   3'- acaGGCuUGa----CUGCUUUUUGCGGu-CG- -5'
26687 5' -48.7 NC_005808.1 + 27992 0.66 0.957054
Target:  5'- aUGgaagCCGAcgcACUGcUGAAAAGCggaucggccGCCGGCa -3'
miRNA:   3'- -ACa---GGCU---UGACuGCUUUUUG---------CGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 27260 0.66 0.957054
Target:  5'- cGUCCGAACccuACGGcucacCGCCuGCa -3'
miRNA:   3'- aCAGGCUUGac-UGCUuuuu-GCGGuCG- -5'
26687 5' -48.7 NC_005808.1 + 130 0.66 0.957054
Target:  5'- uUGUCCcaAGCUacGGCGu--GGCGCCAGg -3'
miRNA:   3'- -ACAGGc-UUGA--CUGCuuuUUGCGGUCg -5'
26687 5' -48.7 NC_005808.1 + 37956 0.66 0.952609
Target:  5'- cUGUCCGAucUUGcCGAcccuGCGgCAGCg -3'
miRNA:   3'- -ACAGGCUu-GACuGCUuuu-UGCgGUCG- -5'
26687 5' -48.7 NC_005808.1 + 41106 0.66 0.947864
Target:  5'- aUGUCCGAccagcACUG-CGAu--ACcCCGGCc -3'
miRNA:   3'- -ACAGGCU-----UGACuGCUuuuUGcGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 22812 0.66 0.946879
Target:  5'- gGUgCCGGACUGGCccgacuuCGCCGcGCu -3'
miRNA:   3'- aCA-GGCUUGACUGcuuuuu-GCGGU-CG- -5'
26687 5' -48.7 NC_005808.1 + 329 0.66 0.942816
Target:  5'- cGUCa-GGCUGGCGGuggcguCGCgCAGCa -3'
miRNA:   3'- aCAGgcUUGACUGCUuuuu--GCG-GUCG- -5'
26687 5' -48.7 NC_005808.1 + 13772 0.66 0.942816
Target:  5'- aGUCCGGccGCaacccGACGAcggcGCGCUGGCu -3'
miRNA:   3'- aCAGGCU--UGa----CUGCUuuu-UGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 7889 0.66 0.93746
Target:  5'- cGUCCaGGGC-GGCGcgugcguAGAuCGCCAGCu -3'
miRNA:   3'- aCAGG-CUUGaCUGCu------UUUuGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 15724 0.66 0.93746
Target:  5'- --aUCGAACUGGCGc--GAgGCCAuGCg -3'
miRNA:   3'- acaGGCUUGACUGCuuuUUgCGGU-CG- -5'
26687 5' -48.7 NC_005808.1 + 37767 0.67 0.931793
Target:  5'- -uUCCguGAAUUcGACGAc-GGCGCCGGCc -3'
miRNA:   3'- acAGG--CUUGA-CUGCUuuUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 20414 0.67 0.931793
Target:  5'- aGUUCagggcaGAGCgUGugGAuuuGCGCCAGUa -3'
miRNA:   3'- aCAGG------CUUG-ACugCUuuuUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 13364 0.67 0.931793
Target:  5'- aGUggaCGGACUucuucGGCGGAcuGGACGCCAuGCg -3'
miRNA:   3'- aCAg--GCUUGA-----CUGCUU--UUUGCGGU-CG- -5'
26687 5' -48.7 NC_005808.1 + 23990 0.67 0.93121
Target:  5'- -aUUCGGcgcacagACUGGCGAAGGugggcGCGUCGGCc -3'
miRNA:   3'- acAGGCU-------UGACUGCUUUU-----UGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 38576 0.67 0.925815
Target:  5'- --cCCGcgcGGCaUGACGcuGGugGCCGGCg -3'
miRNA:   3'- acaGGC---UUG-ACUGCuuUUugCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 19628 0.67 0.925815
Target:  5'- -aUCCGAccgGCUGACGcAGGAAUaCCAGa -3'
miRNA:   3'- acAGGCU---UGACUGC-UUUUUGcGGUCg -5'
26687 5' -48.7 NC_005808.1 + 23578 0.67 0.925815
Target:  5'- gGUgCGGGCggggGGCGAcGAugGCCGucauGCg -3'
miRNA:   3'- aCAgGCUUGa---CUGCUuUUugCGGU----CG- -5'
26687 5' -48.7 NC_005808.1 + 15130 0.67 0.925815
Target:  5'- gGcCCGAccccauGCUGGCGGcgGAuGCGCCcagGGCg -3'
miRNA:   3'- aCaGGCU------UGACUGCU--UUuUGCGG---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.