miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26690 3' -53.5 NC_005808.1 + 30738 0.66 0.725297
Target:  5'- gGGCGAuAUUGGCgCgGGGU--UCGCCCa -3'
miRNA:   3'- -UUGUUuUGGCCG-GaCCCGuuAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 34058 0.66 0.714163
Target:  5'- ---cGAGCgCGGCCugcgauaccUGGGCAAguUCGCCg -3'
miRNA:   3'- uuguUUUG-GCCGG---------ACCCGUU--AGUGGg -5'
26690 3' -53.5 NC_005808.1 + 14349 0.66 0.714163
Target:  5'- cGCAAcauGgUGaGCCUGGcGCAGUCcgACCCg -3'
miRNA:   3'- uUGUUu--UgGC-CGGACC-CGUUAG--UGGG- -5'
26690 3' -53.5 NC_005808.1 + 32010 0.66 0.714163
Target:  5'- uGCAGGcugCGcGCCUGGGUAcuaCGCCCg -3'
miRNA:   3'- uUGUUUug-GC-CGGACCCGUua-GUGGG- -5'
26690 3' -53.5 NC_005808.1 + 36427 0.66 0.702941
Target:  5'- cGGCAAGACCGGCCUGcGCugggaaGAUgACg- -3'
miRNA:   3'- -UUGUUUUGGCCGGACcCG------UUAgUGgg -5'
26690 3' -53.5 NC_005808.1 + 6264 0.66 0.702941
Target:  5'- uGCGGuugauCUGcGCgCUGGGCAggccgaacagGUCGCCCa -3'
miRNA:   3'- uUGUUuu---GGC-CG-GACCCGU----------UAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 17904 0.66 0.702941
Target:  5'- uGGCAccgauGGACa-GCCUGGGCGuggacGUgGCCCg -3'
miRNA:   3'- -UUGU-----UUUGgcCGGACCCGU-----UAgUGGG- -5'
26690 3' -53.5 NC_005808.1 + 29930 0.66 0.702941
Target:  5'- cGACAcgcGCCGcGCaugaUGGGCGAcgACCCg -3'
miRNA:   3'- -UUGUuu-UGGC-CGg---ACCCGUUagUGGG- -5'
26690 3' -53.5 NC_005808.1 + 19406 0.66 0.702941
Target:  5'- cGACGAGGCCGaCCUGcuGCuGUCGCaCCa -3'
miRNA:   3'- -UUGUUUUGGCcGGACc-CGuUAGUG-GG- -5'
26690 3' -53.5 NC_005808.1 + 39669 0.66 0.699559
Target:  5'- cGACGcgguguGGGCCGGCaugggaaUGGGCAAgacgguuuccgcgcUCACCg -3'
miRNA:   3'- -UUGU------UUUGGCCGg------ACCCGUU--------------AGUGGg -5'
26690 3' -53.5 NC_005808.1 + 26060 0.66 0.691644
Target:  5'- gAGCAAGG-CGGCCUGuacGGCuauAUCGgCCa -3'
miRNA:   3'- -UUGUUUUgGCCGGAC---CCGu--UAGUgGG- -5'
26690 3' -53.5 NC_005808.1 + 1555 0.66 0.691644
Target:  5'- gAAUucGACCGGCUggaUGGGCA--UAUCCu -3'
miRNA:   3'- -UUGuuUUGGCCGG---ACCCGUuaGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 23916 0.66 0.688242
Target:  5'- -cCGAGGCCcgcgugguguaacaGGCCggGGGCGGgcgcCGCCCc -3'
miRNA:   3'- uuGUUUUGG--------------CCGGa-CCCGUUa---GUGGG- -5'
26690 3' -53.5 NC_005808.1 + 30294 0.66 0.684835
Target:  5'- cAACGAAuucgacgccgccguaGCCGGCacgCUGGGCcagcaACCCg -3'
miRNA:   3'- -UUGUUU---------------UGGCCG---GACCCGuuag-UGGG- -5'
26690 3' -53.5 NC_005808.1 + 12192 0.66 0.680284
Target:  5'- gAACGAAACCGGCCcGcGCugccuGCCCc -3'
miRNA:   3'- -UUGUUUUGGCCGGaCcCGuuag-UGGG- -5'
26690 3' -53.5 NC_005808.1 + 31039 0.67 0.668875
Target:  5'- uGGCuucgauGACCGGC--GGGCAGUCcuaucaggauGCCCg -3'
miRNA:   3'- -UUGuu----UUGGCCGgaCCCGUUAG----------UGGG- -5'
26690 3' -53.5 NC_005808.1 + 4036 0.67 0.657427
Target:  5'- -uCAAAGCCGGCCgcggcgaGcGGCAGgccagCgGCCCa -3'
miRNA:   3'- uuGUUUUGGCCGGa------C-CCGUUa----G-UGGG- -5'
26690 3' -53.5 NC_005808.1 + 41507 0.67 0.645954
Target:  5'- cGCGcGACaCGGCCaaGGCAAUCuACCg -3'
miRNA:   3'- uUGUuUUG-GCCGGacCCGUUAG-UGGg -5'
26690 3' -53.5 NC_005808.1 + 5524 0.67 0.645954
Target:  5'- gGACAc-GCCGGCCgcccaGGUuccgcccaGGUCGCCCg -3'
miRNA:   3'- -UUGUuuUGGCCGGac---CCG--------UUAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 26262 0.67 0.645954
Target:  5'- gGGCAcccGCCGGCCUGGuCGGcUCGCgCa -3'
miRNA:   3'- -UUGUuu-UGGCCGGACCcGUU-AGUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.