Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26699 | 5' | -59.5 | NC_005808.1 | + | 36198 | 0.68 | 0.356741 |
Target: 5'- uCGaCGACaucaCCGAGgGcGcCGCGGCGGCCGa -3' miRNA: 3'- -GC-GCUG----GGCUCgUuC-GCGCUGCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 36061 | 0.68 | 0.356741 |
Target: 5'- gGCGAUUCGGGCGA---CGACGACCc -3' miRNA: 3'- gCGCUGGGCUCGUUcgcGCUGCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 25597 | 0.68 | 0.362589 |
Target: 5'- uGCGGCCCaGGCAguggcaaccacggcGGCGCGGuCG-CCa -3' miRNA: 3'- gCGCUGGGcUCGU--------------UCGCGCU-GCuGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 31859 | 0.68 | 0.365116 |
Target: 5'- gCGCGcCCUuGGCGAGCagcaagGCGACGACg- -3' miRNA: 3'- -GCGCuGGGcUCGUUCG------CGCUGCUGgc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 27418 | 0.68 | 0.365116 |
Target: 5'- uCGCGcGCCUGGcGCAccGCGCccGGCGGCCGc -3' miRNA: 3'- -GCGC-UGGGCU-CGUu-CGCG--CUGCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 34069 | 0.67 | 0.373625 |
Target: 5'- uGCGAuaCCUGGGCAAGUucGCcGGCGACa- -3' miRNA: 3'- gCGCU--GGGCUCGUUCG--CG-CUGCUGgc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 1078 | 0.67 | 0.373625 |
Target: 5'- uGCGACCCG-GCGcGCGUacuucauguuGGCGGCgGu -3' miRNA: 3'- gCGCUGGGCuCGUuCGCG----------CUGCUGgC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 39656 | 0.67 | 0.373625 |
Target: 5'- uCGaCGugCCGcGCGAcGCgGUGugGGCCGg -3' miRNA: 3'- -GC-GCugGGCuCGUU-CG-CGCugCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 8842 | 0.67 | 0.382268 |
Target: 5'- cCGCaACgCGGGCcAGCGCGuuGGCCu -3' miRNA: 3'- -GCGcUGgGCUCGuUCGCGCugCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 12112 | 0.67 | 0.391043 |
Target: 5'- uCGaCGACUUucAGCAGGUgacGCGAUGACCGg -3' miRNA: 3'- -GC-GCUGGGc-UCGUUCG---CGCUGCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 22233 | 0.67 | 0.391043 |
Target: 5'- aCGCGGCCCuGGUugucGGcCGCGAUGGCg- -3' miRNA: 3'- -GCGCUGGGcUCGu---UC-GCGCUGCUGgc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 14374 | 0.67 | 0.391043 |
Target: 5'- -cCGACCCGcGCGuggucgucGGCGUGGcCGACCu -3' miRNA: 3'- gcGCUGGGCuCGU--------UCGCGCU-GCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 34394 | 0.67 | 0.391043 |
Target: 5'- gCGCGACUaCGAgGCcguGCGCGAUGaaaucGCCGg -3' miRNA: 3'- -GCGCUGG-GCU-CGuu-CGCGCUGC-----UGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 13574 | 0.67 | 0.391043 |
Target: 5'- -uCGACCUG-GCcgAAGCGCGGCGcCUGg -3' miRNA: 3'- gcGCUGGGCuCG--UUCGCGCUGCuGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 28788 | 0.67 | 0.396371 |
Target: 5'- uCGCGcuuGCCCugguugccgaucuuGAGCAgccAGCGCGccgucgucggguuGCGGCCGg -3' miRNA: 3'- -GCGC---UGGG--------------CUCGU---UCGCGC-------------UGCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 34276 | 0.67 | 0.399948 |
Target: 5'- aCGCGcaacuuucCCCGAGC-AGCGCGcACcGCUGg -3' miRNA: 3'- -GCGCu-------GGGCUCGuUCGCGC-UGcUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 38028 | 0.67 | 0.399948 |
Target: 5'- gGCG-CaCCGAGC-AGCGCcucGGCGACUu -3' miRNA: 3'- gCGCuG-GGCUCGuUCGCG---CUGCUGGc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 34221 | 0.67 | 0.399948 |
Target: 5'- gGCGAuuCUCGAagauuCGAGCGCGGCGGCg- -3' miRNA: 3'- gCGCU--GGGCUc----GUUCGCGCUGCUGgc -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 21947 | 0.67 | 0.399948 |
Target: 5'- --aGGCCCaacgGGGCAcaguGCGCGgaACGACCGa -3' miRNA: 3'- gcgCUGGG----CUCGUu---CGCGC--UGCUGGC- -5' |
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26699 | 5' | -59.5 | NC_005808.1 | + | 40831 | 0.67 | 0.408982 |
Target: 5'- -uCGGCCCGAcGCGccaGGCGCaGGcCGGCCa -3' miRNA: 3'- gcGCUGGGCU-CGU---UCGCG-CU-GCUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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