miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26702 3' -55.6 NC_005808.1 + 29947 0.66 0.599088
Target:  5'- cCAGuCAGguGgUGCUUGuCgUCGCGGCGc -3'
miRNA:   3'- -GUC-GUCguUgACGAGCuG-AGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 3564 0.66 0.599088
Target:  5'- -cGCAGCAGCggGCUgGGCguacaccgaucCGCGGCc -3'
miRNA:   3'- guCGUCGUUGa-CGAgCUGa----------GCGUCGu -5'
26702 3' -55.6 NC_005808.1 + 38559 0.66 0.599088
Target:  5'- -cGCccGGCuGC-GCUCGACccgCGCGGCAu -3'
miRNA:   3'- guCG--UCGuUGaCGAGCUGa--GCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 23659 0.66 0.576454
Target:  5'- gGGCAGCAACUGCaccaggCGACcCuCGGUc -3'
miRNA:   3'- gUCGUCGUUGACGa-----GCUGaGcGUCGu -5'
26702 3' -55.6 NC_005808.1 + 1141 0.66 0.576454
Target:  5'- gAGCAGCGGCcGUUUGcGCUCGCcGUc -3'
miRNA:   3'- gUCGUCGUUGaCGAGC-UGAGCGuCGu -5'
26702 3' -55.6 NC_005808.1 + 18708 0.66 0.554016
Target:  5'- uCAGCAGCAGC-GCaUCGguACg-GCGGCAc -3'
miRNA:   3'- -GUCGUCGUUGaCG-AGC--UGagCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 31923 0.66 0.542893
Target:  5'- -uGCGGCGuuucgagcGCUGCUCGACaCGCA-CGa -3'
miRNA:   3'- guCGUCGU--------UGACGAGCUGaGCGUcGU- -5'
26702 3' -55.6 NC_005808.1 + 5664 0.67 0.520877
Target:  5'- cCAGCGGUAGCUGUUCaGCaaGCuGCu -3'
miRNA:   3'- -GUCGUCGUUGACGAGcUGagCGuCGu -5'
26702 3' -55.6 NC_005808.1 + 39063 0.67 0.51434
Target:  5'- uCGGCGGCAGCUGgcacuacacgucgaaCUCGGguuCUCGCGcuGCGu -3'
miRNA:   3'- -GUCGUCGUUGAC---------------GAGCU---GAGCGU--CGU- -5'
26702 3' -55.6 NC_005808.1 + 16224 0.67 0.51
Target:  5'- gAGCAGCAGCaaCUCGGugaGCGGCAc -3'
miRNA:   3'- gUCGUCGUUGacGAGCUgagCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 31085 0.67 0.51
Target:  5'- -uGguGCcGCUGCUCacCUCGguGCAg -3'
miRNA:   3'- guCguCGuUGACGAGcuGAGCguCGU- -5'
26702 3' -55.6 NC_005808.1 + 12521 0.67 0.51
Target:  5'- aCAGCgcgucgAGguGCUGCUCGAC-CuCGGCGu -3'
miRNA:   3'- -GUCG------UCguUGACGAGCUGaGcGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 26122 0.67 0.51
Target:  5'- -uGcCGGCAugUGUUCG--UCGCGGCAg -3'
miRNA:   3'- guC-GUCGUugACGAGCugAGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 39619 0.67 0.492799
Target:  5'- uCGGCGGCAACUGgaacaacacgucgaaCUCGGguuCUCGCGcuGCGa -3'
miRNA:   3'- -GUCGUCGUUGAC---------------GAGCU---GAGCGU--CGU- -5'
26702 3' -55.6 NC_005808.1 + 20065 0.67 0.488541
Target:  5'- cCGGCAcGCGcgcGCUGCgCGuGCUCGCuGCGg -3'
miRNA:   3'- -GUCGU-CGU---UGACGaGC-UGAGCGuCGU- -5'
26702 3' -55.6 NC_005808.1 + 4595 0.67 0.488541
Target:  5'- aGGCgAGgAACUGCUCGGC-CuCGGCGa -3'
miRNA:   3'- gUCG-UCgUUGACGAGCUGaGcGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 34217 0.67 0.47797
Target:  5'- gGGCGGCGAUU-CUCGAagauucgagCGCGGCGg -3'
miRNA:   3'- gUCGUCGUUGAcGAGCUga-------GCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 27335 0.67 0.47797
Target:  5'- aCAGCGGgCAACUGUUUG---UGCGGCAg -3'
miRNA:   3'- -GUCGUC-GUUGACGAGCugaGCGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 10245 0.67 0.47797
Target:  5'- uCGGCGGCGACcGCagCGACcuggGCGGCGg -3'
miRNA:   3'- -GUCGUCGUUGaCGa-GCUGag--CGUCGU- -5'
26702 3' -55.6 NC_005808.1 + 27497 0.68 0.467514
Target:  5'- aGGCAGCuauuACgGCgcgCGG-UCGCAGCAa -3'
miRNA:   3'- gUCGUCGu---UGaCGa--GCUgAGCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.