Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 41555 | 0.69 | 0.188942 |
Target: 5'- uUCGCGGCgaCAU-GcUGCCGCCGgCCGu -3' miRNA: 3'- uAGCGCCG--GUAgCaACGGCGGCgGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 41283 | 0.68 | 0.215406 |
Target: 5'- cUUGuCGGCC-UgGUgGCCGUCGCCCu -3' miRNA: 3'- uAGC-GCCGGuAgCAaCGGCGGCGGGu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 40228 | 0.66 | 0.291959 |
Target: 5'- -cCGUGcGCCucgaacCGUUGCCGuUUGCCCAg -3' miRNA: 3'- uaGCGC-CGGua----GCAACGGC-GGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 38408 | 0.68 | 0.215406 |
Target: 5'- cUCGCGGCCAacaugcccgccaUCGagGCgGCCGgCUAc -3' miRNA: 3'- uAGCGCCGGU------------AGCaaCGgCGGCgGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 38172 | 0.69 | 0.169871 |
Target: 5'- uGUUGCGGCCGg-GUacgaccuacgacUGCCGCaCGCUCAa -3' miRNA: 3'- -UAGCGCCGGUagCA------------ACGGCG-GCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 37706 | 0.67 | 0.25129 |
Target: 5'- -cCGUGGCCGaaaaCGagGCCGCCGUCg- -3' miRNA: 3'- uaGCGCCGGUa---GCaaCGGCGGCGGgu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 37677 | 0.69 | 0.16538 |
Target: 5'- cGUCGCGGgCAUCGcUGCCGaCGUuuCCAc -3' miRNA: 3'- -UAGCGCCgGUAGCaACGGCgGCG--GGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 37026 | 0.73 | 0.080709 |
Target: 5'- gGUgGCGGCCAgCGUUGgCGCCGUCg- -3' miRNA: 3'- -UAgCGCCGGUaGCAACgGCGGCGGgu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 34017 | 0.69 | 0.169871 |
Target: 5'- gGUCGcCGuGaCCGUCGUgucgcgccUGUCGCUGCCCGc -3' miRNA: 3'- -UAGC-GC-C-GGUAGCA--------ACGGCGGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 33813 | 0.7 | 0.14449 |
Target: 5'- -gCGCGGCCGacccaUCGUgcGCCGCgugcUGCCCGa -3' miRNA: 3'- uaGCGCCGGU-----AGCAa-CGGCG----GCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 33763 | 0.72 | 0.103855 |
Target: 5'- -gCGCuGGCCcgCGUUGCgGCUGgCCCGa -3' miRNA: 3'- uaGCG-CCGGuaGCAACGgCGGC-GGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 33237 | 0.72 | 0.099326 |
Target: 5'- -aCGCGGCCGcaucaUCaagcaacugcaaaagGaUGCCGCCGCCCGc -3' miRNA: 3'- uaGCGCCGGU-----AG---------------CaACGGCGGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 32357 | 0.69 | 0.160996 |
Target: 5'- gGUCGCuGCgGUCGccGCCgaggccccgGCCGCCCAg -3' miRNA: 3'- -UAGCGcCGgUAGCaaCGG---------CGGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 32315 | 0.7 | 0.150084 |
Target: 5'- cAUCGCcGCCAUCaagGCCggcgucccgacaaccGCCGCCCAg -3' miRNA: 3'- -UAGCGcCGGUAGcaaCGG---------------CGGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 29996 | 0.69 | 0.190949 |
Target: 5'- cGUCGaacgGGCCAUCGUgcuccaacugcacgGCCGC-GCCCu -3' miRNA: 3'- -UAGCg---CCGGUAGCAa-------------CGGCGgCGGGu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 28837 | 0.67 | 0.25129 |
Target: 5'- gGUUGCGGCCGgacUUGCCgaaGCUGuCCCAg -3' miRNA: 3'- -UAGCGCCGGUagcAACGG---CGGC-GGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 22233 | 0.66 | 0.264302 |
Target: 5'- -aCGCGGCCcUgGUUGUCGgCCGCg-- -3' miRNA: 3'- uaGCGCCGGuAgCAACGGC-GGCGggu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 20266 | 0.66 | 0.29124 |
Target: 5'- uGUUGCugcuguuGGCCGUCGUUGC--CCGCaCCAg -3' miRNA: 3'- -UAGCG-------CCGGUAGCAACGgcGGCG-GGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 20180 | 0.7 | 0.152541 |
Target: 5'- cUUGCGGCU-UCGccUUGUCGUCGCCCu -3' miRNA: 3'- uAGCGCCGGuAGC--AACGGCGGCGGGu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 19154 | 0.68 | 0.215406 |
Target: 5'- -cCGuCaGCCAgauggaugCGUUGUCGCUGCCCGu -3' miRNA: 3'- uaGC-GcCGGUa-------GCAACGGCGGCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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