miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26706 5' -62.3 NC_005808.1 + 91 0.67 0.232766
Target:  5'- --aGCGaGCCAuuuccagaUCGUucUGCgCGCCGUCCAa -3'
miRNA:   3'- uagCGC-CGGU--------AGCA--ACG-GCGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 1832 0.65 0.303639
Target:  5'- --aGUGGCCGaagaaagccaggaUGUUGCCGCCGUCUu -3'
miRNA:   3'- uagCGCCGGUa------------GCAACGGCGGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 3744 0.68 0.20987
Target:  5'- gGUgGUgGGCaCGUCGgUGCCGCCGCUgGa -3'
miRNA:   3'- -UAgCG-CCG-GUAGCaACGGCGGCGGgU- -5'
26706 5' -62.3 NC_005808.1 + 3875 0.7 0.156717
Target:  5'- cGUCGCuguaGGCCG-CGcUGCCGUCGCCg- -3'
miRNA:   3'- -UAGCG----CCGGUaGCaACGGCGGCGGgu -5'
26706 5' -62.3 NC_005808.1 + 4046 0.66 0.277856
Target:  5'- -cCGCGGCgAgCGgcagGCCaGCgGCCCAg -3'
miRNA:   3'- uaGCGCCGgUaGCaa--CGG-CGgCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 4651 0.66 0.289808
Target:  5'- -gCGuCGGCCAUCGcgucaaggucgaUGCCguagguaGCCGCCCc -3'
miRNA:   3'- uaGC-GCCGGUAGCa-----------ACGG-------CGGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 5155 0.69 0.179181
Target:  5'- --gGCGGCCGUCGcUGCUcaCGCCCu -3'
miRNA:   3'- uagCGCCGGUAGCaACGGcgGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 6414 0.73 0.092882
Target:  5'- aGUCGCGGCCcauGUCGUUGgCGCCuGUCaCGg -3'
miRNA:   3'- -UAGCGCCGG---UAGCAACgGCGG-CGG-GU- -5'
26706 5' -62.3 NC_005808.1 + 7555 0.71 0.132053
Target:  5'- cUCGCGGCCggGUCGUacuuaaucggauagUaGCCGCCGCgUAg -3'
miRNA:   3'- uAGCGCCGG--UAGCA--------------A-CGGCGGCGgGU- -5'
26706 5' -62.3 NC_005808.1 + 8038 0.74 0.070069
Target:  5'- --gGCcGCCGUCcUUGCCGCCGUCCAu -3'
miRNA:   3'- uagCGcCGGUAGcAACGGCGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 8213 0.69 0.179181
Target:  5'- cAUgGCGGCCAguUCGUgcgcgGCCG-UGCCCu -3'
miRNA:   3'- -UAgCGCCGGU--AGCAa----CGGCgGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 9215 0.68 0.204458
Target:  5'- -gCGCGGCgCA-CGUucUGCgGCgCGCCCGg -3'
miRNA:   3'- uaGCGCCG-GUaGCA--ACGgCG-GCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 9992 0.7 0.148466
Target:  5'- -gCGUGGCgggGUCGaaagUGCCGCgCGCCCGg -3'
miRNA:   3'- uaGCGCCGg--UAGCa---ACGGCG-GCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 10495 0.66 0.277856
Target:  5'- --aGCGGCCAgggCGUUGagcaaCGCgGCCg- -3'
miRNA:   3'- uagCGCCGGUa--GCAACg----GCGgCGGgu -5'
26706 5' -62.3 NC_005808.1 + 11565 0.73 0.095518
Target:  5'- -cCGcCGGUCAUCGaaGCCauGCCGCCCAg -3'
miRNA:   3'- uaGC-GCCGGUAGCaaCGG--CGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 12490 0.66 0.296297
Target:  5'- -gCGCGGCCucAUCGccugggacaaggGCCGUggCGCCCGg -3'
miRNA:   3'- uaGCGCCGG--UAGCaa----------CGGCG--GCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 12625 0.67 0.257729
Target:  5'- -aCGCGcucGgCAUCGcUGCUGCCGUCCu -3'
miRNA:   3'- uaGCGC---CgGUAGCaACGGCGGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 12722 0.67 0.25129
Target:  5'- aGUCGCccGGcCCGUUGgugcugggUGCCGC-GCCCAg -3'
miRNA:   3'- -UAGCG--CC-GGUAGCa-------ACGGCGgCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 14297 0.67 0.244984
Target:  5'- -aUGCGGCCcacGUCGUUGCugaacuggCGCgCGCCUu -3'
miRNA:   3'- uaGCGCCGG---UAGCAACG--------GCG-GCGGGu -5'
26706 5' -62.3 NC_005808.1 + 14383 0.67 0.257729
Target:  5'- -gCGUGGUCGUCGgcGUgGCCGaCCUg -3'
miRNA:   3'- uaGCGCCGGUAGCaaCGgCGGC-GGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.