miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26706 5' -62.3 NC_005808.1 + 16827 1.06 0.000221
Target:  5'- cAUCGCGGCCAUCGUUGCCGCCGCCCAg -3'
miRNA:   3'- -UAGCGCCGGUAGCAACGGCGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 16992 0.67 0.244984
Target:  5'- -cCGCGccGCCGUgGUUGCCaCUGCCUg -3'
miRNA:   3'- uaGCGC--CGGUAgCAACGGcGGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 18941 0.67 0.23881
Target:  5'- gGUCGCcuGGUgcaGUUGcUGCCGCCGCCg- -3'
miRNA:   3'- -UAGCG--CCGg--UAGCaACGGCGGCGGgu -5'
26706 5' -62.3 NC_005808.1 + 19014 0.72 0.098224
Target:  5'- -aUGaCGGCCAUCGUcGCCccCCGCCCGc -3'
miRNA:   3'- uaGC-GCCGGUAGCAaCGGc-GGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 19054 0.67 0.25129
Target:  5'- uGUCGgccgaGGCCAUCGaccgcgUG-CGCCGCCUg -3'
miRNA:   3'- -UAGCg----CCGGUAGCa-----ACgGCGGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 19154 0.68 0.215406
Target:  5'- -cCGuCaGCCAgauggaugCGUUGUCGCUGCCCGu -3'
miRNA:   3'- uaGC-GcCGGUa-------GCAACGGCGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 20180 0.7 0.152541
Target:  5'- cUUGCGGCU-UCGccUUGUCGUCGCCCu -3'
miRNA:   3'- uAGCGCCGGuAGC--AACGGCGGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 20266 0.66 0.29124
Target:  5'- uGUUGCugcuguuGGCCGUCGUUGC--CCGCaCCAg -3'
miRNA:   3'- -UAGCG-------CCGGUAGCAACGgcGGCG-GGU- -5'
26706 5' -62.3 NC_005808.1 + 22233 0.66 0.264302
Target:  5'- -aCGCGGCCcUgGUUGUCGgCCGCg-- -3'
miRNA:   3'- uaGCGCCGGuAgCAACGGC-GGCGggu -5'
26706 5' -62.3 NC_005808.1 + 28837 0.67 0.25129
Target:  5'- gGUUGCGGCCGgacUUGCCgaaGCUGuCCCAg -3'
miRNA:   3'- -UAGCGCCGGUagcAACGG---CGGC-GGGU- -5'
26706 5' -62.3 NC_005808.1 + 29996 0.69 0.190949
Target:  5'- cGUCGaacgGGCCAUCGUgcuccaacugcacgGCCGC-GCCCu -3'
miRNA:   3'- -UAGCg---CCGGUAGCAa-------------CGGCGgCGGGu -5'
26706 5' -62.3 NC_005808.1 + 32315 0.7 0.150084
Target:  5'- cAUCGCcGCCAUCaagGCCggcgucccgacaaccGCCGCCCAg -3'
miRNA:   3'- -UAGCGcCGGUAGcaaCGG---------------CGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 32357 0.69 0.160996
Target:  5'- gGUCGCuGCgGUCGccGCCgaggccccgGCCGCCCAg -3'
miRNA:   3'- -UAGCGcCGgUAGCaaCGG---------CGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 33237 0.72 0.099326
Target:  5'- -aCGCGGCCGcaucaUCaagcaacugcaaaagGaUGCCGCCGCCCGc -3'
miRNA:   3'- uaGCGCCGGU-----AG---------------CaACGGCGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 33763 0.72 0.103855
Target:  5'- -gCGCuGGCCcgCGUUGCgGCUGgCCCGa -3'
miRNA:   3'- uaGCG-CCGGuaGCAACGgCGGC-GGGU- -5'
26706 5' -62.3 NC_005808.1 + 33813 0.7 0.14449
Target:  5'- -gCGCGGCCGacccaUCGUgcGCCGCgugcUGCCCGa -3'
miRNA:   3'- uaGCGCCGGU-----AGCAa-CGGCG----GCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 34017 0.69 0.169871
Target:  5'- gGUCGcCGuGaCCGUCGUgucgcgccUGUCGCUGCCCGc -3'
miRNA:   3'- -UAGC-GC-C-GGUAGCA--------ACGGCGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 37026 0.73 0.080709
Target:  5'- gGUgGCGGCCAgCGUUGgCGCCGUCg- -3'
miRNA:   3'- -UAgCGCCGGUaGCAACgGCGGCGGgu -5'
26706 5' -62.3 NC_005808.1 + 37677 0.69 0.16538
Target:  5'- cGUCGCGGgCAUCGcUGCCGaCGUuuCCAc -3'
miRNA:   3'- -UAGCGCCgGUAGCaACGGCgGCG--GGU- -5'
26706 5' -62.3 NC_005808.1 + 37706 0.67 0.25129
Target:  5'- -cCGUGGCCGaaaaCGagGCCGCCGUCg- -3'
miRNA:   3'- uaGCGCCGGUa---GCaaCGGCGGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.